Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   NCTC11637_00401 Genome accession   LS483488
Coordinates   404629..404895 (+) Length   88 a.a.
NCBI ID   SQJ03277.1    Uniprot ID   -
Organism   Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 399629..409895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCTC11637_00395 - 400126..400677 (-) 552 SQJ03266.1 Protein of uncharacterised function (DUF1524) -
  NCTC11637_00396 - 400733..401662 (-) 930 SQJ03268.1 RloF -
  NCTC11637_00397 - 401707..402486 (+) 780 SQJ03269.1 PZ1b protein -
  NCTC11637_00398 - 402506..402799 (+) 294 SQJ03271.1 PZ2b protein -
  NCTC11637_00399 - 402806..404329 (+) 1524 SQJ03273.1 Uncharacterised protein -
  NCTC11637_00400 virB2-1 404353..404628 (+) 276 SQJ03275.1 VirB2 type IV secretion protein -
  NCTC11637_00401 comB3 404629..404895 (+) 267 SQJ03277.1 VirB3 type IV secretion protein Machinery gene
  NCTC11637_00402 comB4 404888..407311 (+) 2424 SQJ03279.1 VirB4-like protein Machinery gene
  NCTC11637_00403 topA_4 407314..409347 (+) 2034 SQJ03281.1 DNA topoisomerase I (topA) -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 10177.01 Da        Isoelectric Point: 4.8782

>NTDB_id=20758 NCTC11637_00401 SQJ03277.1 404629..404895(+) (comB3) [Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637]
MALHIVCVESINIREISKRETFLGLNLDSWIVSFLMSAWLLSFQPLYAMGLMASCVFIFYILEFFDEDITAILHALFTLR
TGARNYYA

Nucleotide


Download         Length: 267 bp        

>NTDB_id=20758 NCTC11637_00401 SQJ03277.1 404629..404895(+) (comB3) [Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637]
ATGGCATTGCATATTGTTTGTGTTGAAAGTATCAACATTAGAGAAATCAGCAAAAGAGAAACTTTTTTGGGATTAAACTT
GGATAGTTGGATTGTTAGTTTCTTAATGTCGGCATGGTTACTTTCATTCCAACCACTTTATGCTATGGGTTTAATGGCTA
GTTGTGTGTTTATATTCTACATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCATGCGCTTTTCACATTAAGA
ACAGGAGCTAGAAATTATTATGCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

42.169

94.318

0.398

Multiple sequence alignment