Detailed information NTG0020738

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: HI_1590
• Genome accession: L42023
• Coordinates: 1658455..1659795 (-)
• Length: 446 a.a.
• NCBI ID: AAC23238.1
• Uniprot ID: -
• Organism: Haemophilus influenzae Rd KW20
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1653455..1664795

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HI_1586	-	1653802..1655361 (-)	1560	AAC23234.1	conserved hypothetical integral membrane protein	-
HI_1587	-	1655765..1656169 (+)	405	AAC23235.1	DNA-binding protein H-NS (hns)	-
HI_1588	-	1656239..1657075 (+)	837	AAC23236.1	formyltetrahydrofolate deformylase (purU)	-
HI_1589	-	1657075..1658373 (+)	1299	AAC23237.1	3-phosphoshikimate-1-carboxyvinyltransferase (aroA)	-
HI_1590	rarA	1658455..1659795 (-)	1341	AAC23238.1	conserved hypothetical protein	Machinery gene
HI_1591	-	1659856..1660473 (-)	618	AAC23239.1	outer membrane lipoproteins carrier protein (lolA)	-
HI_1592	-	1660491..1662080 (-)	1590	AAC23240.1	cell division protein FtsK-related protein	-
HI_1593	-	1662062..1662217 (-)	156	AAC23244.1	predicted coding region HI1593	-
HI_1594	-	1662252..1662923 (-)	672	AAC23245.1	predicted coding region HI1594	-
HI_1595	-	1662937..1663260 (-)	324	AAC23246.1	predicted coding region HI1595	-
HI_1596	-	1663262..1663762 (-)	501	AAC23241.1	leucine responsive regulatory protein (lrp)	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 50217.01 Da
• Isoelectric Point: 6.4146

>NTDB_id=20738 HI_1590 AAC23238.1 1658455..1659795(-) (rarA) [Haemophilus influenzae Rd KW20]
MSNFNFDFAENDFGPLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGHIYSMIFWGPPGTGKTTLAEIIAQRINAEVER
ISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIEDGTVIFIGATTENPSFELNNALLSRARVY
VLKSLTTAEIEQVLQQAVEDPKRGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMADETENGKKIDRTLLKEVL
GERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCF
SRVGAYEGERAIAQAIIYLSVAPKSNAVYTAFNTAKQQAKDLPDYDVPPHLRNAPTNLMKELGYGTEYRYAHDEPNAYAA
GENYFPPELKDTQYYFPTNRGMEIQIKEKLERLREQDKSAVKKRYK

Nucleotide

• Length: 1341 bp

>NTDB_id=20738 HI_1590 AAC23238.1 1658455..1659795(-) (rarA) [Haemophilus influenzae Rd KW20]
ATGTCTAACTTCAATTTTGATTTTGCCGAAAATGATTTTGGCCCACTGGCAGCCAAGATGCGTCCAACGAGTCTAGAACA
ATATTTTGGGCAAAGCCATTTAATTGGCGAGGGCAAGCCACTGCGAAAAGCTATCCAAGCTGGTCATATTTATTCTATGA
TTTTTTGGGGCCCACCAGGTACGGGGAAAACAACCCTTGCAGAAATCATAGCACAACGTATTAATGCAGAAGTAGAGCGA
ATTTCTGCGGTGACGAGTGGTATCAAAGAAATTCGTGAAGCCATTGATCGTGCAAAACAAAATCGTCTTGCGGATCGTAA
AACTATCTTATTTGTGGATGAAGTCCATCGTTTTAATAAAAGCCAGCAAGATGCATTTTTACCGCACATTGAAGACGGAA
CCGTTATTTTTATTGGGGCGACAACAGAAAATCCCTCTTTTGAGCTAAATAATGCGTTGCTTTCTCGTGCCCGAGTGTAT
GTGCTGAAATCACTCACAACGGCTGAAATTGAACAAGTTTTGCAGCAAGCTGTAGAAGATCCTAAACGTGGATTGGGTAA
AGAGCGGTTAATTTTAGAAGAGAATTTACTGCAAGTACTTGCCGAATATGTTAATGGGGATGCACGATTAGCTTTGAATT
GCCTCGAATTAATGGTGGATATGGCGGATGAAACGGAAAATGGAAAGAAAATTGACCGCACTTTATTAAAAGAAGTCTTA
GGCGAACGCCAAGCGAGATTTGATAAACAAGGTGATCGTTTCTATGATTTAATTTCTGCGCTACATAAATCTGTTCGAGG
TTCTGCTCCAGATGCTGCGCTGTATTGGTATGCAAGAATTTTAACGGCAGGTGGAGACCCTTTATATGTCGCGCGCCGAT
TACTTGCCATTGCTTCAGAAGATGTGGGAAATGCAGATCCTCGTGCTATGCAAGTTGCATTGGCTGCTTGGGATTGCTTT
AGTCGCGTGGGGGCTTATGAAGGGGAGCGAGCCATCGCCCAAGCCATTATATATCTTTCGGTAGCACCAAAAAGTAATGC
GGTTTATACTGCATTTAACACTGCGAAACAGCAAGCGAAAGATTTGCCAGATTACGATGTTCCACCACATTTACGCAATG
CGCCGACTAATTTAATGAAAGAGCTCGGATATGGCACTGAATATCGTTATGCTCACGATGAACCTAACGCTTATGCGGCA
GGCGAAAATTATTTCCCACCTGAATTAAAAGATACTCAATATTATTTTCCGACAAATAGAGGTATGGAAATTCAGATTAA
GGAAAAACTAGAACGGTTACGTGAGCAAGATAAAAGTGCGGTGAAAAAACGGTATAAATAA

Domains

Predicted by InterProScan.

• MgsA AAA+ ATPase C terminal (MgsA_C) (267-433)

• ATPase family associated with various cellular activities (AAA) (AAA) (53-159)

• AAA C-terminal domain (AAA_assoc_2) (188-266)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.192	94.395	0.37