Detailed information NTG0020730

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: AYT26_RS21855
• Genome accession: NC_002570
• Coordinates: 1359380..1360555 (+)
• Length: 391 a.a.
• NCBI ID: WP_083757503.1
• Uniprot ID: -
• Organism: Halalkalibacterium halodurans C-125
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1354380..1365555

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AYT26_RS06580 (BH1259)	cymR	1354675..1355094 (+)	420	WP_010897427.1	cysteine metabolism transcriptional regulator CymR	-
AYT26_RS06585 (BH1260)	-	1355119..1356279 (+)	1161	WP_010897428.1	cysteine desulfurase family protein	-
AYT26_RS06590 (BH1261)	mnmA	1356310..1357425 (+)	1116	WP_010897429.1	tRNA 2-thiouridine(34) synthase MnmA	-
AYT26_RS06595 (BH1262)	-	1357562..1358236 (+)	675	WP_041820419.1	tetratricopeptide repeat protein	-
AYT26_RS21850	-	1358233..1359408 (+)	1176	WP_010897431.1	helix-hairpin-helix domain-containing protein	-
AYT26_RS21855	recD2	1359380..1360555 (+)	1176	WP_083757503.1	AAA family ATPase	Machinery gene
AYT26_RS06605 (BH1264)	-	1360582..1361055 (+)	474	WP_010897432.1	PRC-barrel domain-containing protein	-
AYT26_RS06610 (BH1265)	-	1361070..1361258 (+)	189	WP_010897433.1	hypothetical protein	-
AYT26_RS20885	-	1361306..1361482 (+)	177	WP_134229292.1	DUF3918 domain-containing protein	-
AYT26_RS06615 (BH1266)	-	1361705..1362781 (+)	1077	WP_010897434.1	AI-2E family transporter	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 43533.99 Da
• Isoelectric Point: 5.9043

>NTDB_id=20730 AYT26_RS21855 WP_083757503.1 1359380..1360555(+) (recD2) [Halalkalibacterium halodurans C-125]
MPAFHGLSLNVADYPKGTSFPILLVAPTGRAAKRMSEATELPATTIHRLLGWKGANSGFDKNEHDPLEGELLIVDEVSMM
DVWIANQLLKSVPKGMQVIFVGDQDQLPSVGPGQVMRDLLTSGVVPTVELTDIYRQAEGSSIIDLAHAIKSGSLPNNIVE
PMKDRRFFPCRPEQVKEVIGQICRGAKSKGYTAKDIQVLAPMYKGNAGINELNAMLQELFNPASEQRRELRFGDIVYRTG
DVVLQLVNNPEENVYNGDRGEIVAILFAKETVEKQDQVVISFDGVEVIYYRKDLSQITHAYCTSIHKAQGSEFPTVVMPI
IRNYSRMLKRNLLYTGITRAKQYLLMCGEVSAMERAIQELDEDGRNSMLKEKLQAVLGKDNGHDLKDDCLH

Nucleotide

• Length: 1176 bp

>NTDB_id=20730 AYT26_RS21855 WP_083757503.1 1359380..1360555(+) (recD2) [Halalkalibacterium halodurans C-125]
ATGCCCGCCTTTCACGGACTTTCGCTTAATGTCGCTGATTATCCGAAAGGGACTTCCTTCCCAATATTACTCGTGGCCCC
GACTGGCCGGGCAGCCAAACGGATGAGTGAAGCGACAGAGCTGCCAGCCACGACAATCCACCGTTTATTAGGATGGAAAG
GTGCCAATAGTGGCTTTGACAAAAATGAACACGATCCCCTAGAAGGTGAGCTCCTAATTGTGGATGAAGTGTCGATGATG
GACGTGTGGATTGCTAACCAGCTGCTAAAATCCGTACCGAAAGGGATGCAAGTCATTTTTGTTGGCGACCAAGATCAGCT
TCCATCTGTTGGTCCAGGCCAGGTGATGAGAGATTTGCTTACCTCGGGTGTCGTTCCTACGGTGGAGTTAACGGATATCT
ATAGGCAAGCGGAAGGGTCCTCAATCATTGATCTAGCGCATGCCATAAAATCAGGTTCATTACCAAATAACATTGTAGAG
CCAATGAAGGACAGGCGCTTTTTTCCGTGCAGGCCGGAACAAGTAAAGGAAGTGATTGGGCAAATTTGTCGTGGGGCAAA
AAGCAAAGGCTATACTGCTAAAGACATCCAAGTGCTCGCGCCAATGTATAAAGGAAATGCTGGAATTAATGAATTGAATG
CCATGCTTCAAGAATTGTTCAATCCAGCGAGTGAGCAGCGGAGAGAGTTACGGTTCGGGGATATCGTATACCGCACAGGG
GATGTTGTCTTACAGCTTGTAAACAATCCTGAAGAGAATGTCTATAATGGGGACCGAGGGGAAATTGTGGCCATCTTATT
TGCCAAGGAAACGGTGGAAAAACAAGACCAAGTCGTCATTTCTTTCGATGGCGTGGAAGTGATTTATTATCGTAAAGATT
TATCACAGATTACTCATGCGTATTGTACATCCATTCATAAAGCACAAGGAAGTGAATTTCCTACGGTCGTCATGCCGATC
ATCCGCAACTATTCACGGATGCTAAAGCGGAACCTTTTGTACACAGGAATAACGAGAGCGAAGCAATATTTATTAATGTG
CGGGGAAGTTTCAGCGATGGAACGAGCGATTCAAGAATTAGATGAAGACGGCCGGAATTCTATGCTGAAGGAGAAGCTTC
AGGCAGTACTGGGAAAAGACAACGGACATGACCTAAAGGACGATTGCTTACACTAA

Domains

Predicted by InterproScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (212-282)

• AAA domain (AAA_30) (20-166)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (299-347)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	62.432	94.629	0.591