Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   Bateq7PJ16_RS08460 Genome accession   NZ_CP023409
Coordinates   1611749..1612198 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain 7PJ-16     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1606749..1617198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Bateq7PJ16_RS08420 (Bateq7PJ16_1660) ctaE 1606766..1607389 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  Bateq7PJ16_RS08425 (Bateq7PJ16_1661) ctaF 1607392..1607724 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  Bateq7PJ16_RS08430 (Bateq7PJ16_1662) ctaG 1607752..1608645 (+) 894 WP_015715837.1 cytochrome c oxidase assembly factor CtaG -
  Bateq7PJ16_RS08435 (Bateq7PJ16_1663) ylbA 1608677..1609039 (-) 363 WP_003232238.1 YugN family protein -
  Bateq7PJ16_RS08440 (Bateq7PJ16_1664) ylbB 1609179..1609625 (+) 447 WP_003221362.1 CBS domain-containing protein -
  Bateq7PJ16_RS08445 (Bateq7PJ16_1665) ylbC 1609709..1610749 (+) 1041 WP_159376790.1 CAP domain-containing protein -
  Bateq7PJ16_RS08450 (Bateq7PJ16_1666) ylbD 1610980..1611378 (+) 399 WP_032725642.1 YlbD family protein -
  Bateq7PJ16_RS08455 (Bateq7PJ16_1667) ylbE 1611394..1611633 (+) 240 WP_003232231.1 YlbE-like family protein -
  Bateq7PJ16_RS08460 (Bateq7PJ16_1668) ylbF 1611749..1612198 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  Bateq7PJ16_RS08465 ylbG 1612253..1612525 (+) 273 WP_009967171.1 YlbG family protein -
  Bateq7PJ16_RS08470 (Bateq7PJ16_1670) rsmD 1612849..1613403 (+) 555 WP_015483196.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  Bateq7PJ16_RS08475 (Bateq7PJ16_1671) coaD 1613408..1613893 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  Bateq7PJ16_RS08480 (Bateq7PJ16_1672) spoVV 1613904..1615130 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  Bateq7PJ16_RS08485 (Bateq7PJ16_1673) ylbK 1615311..1616093 (+) 783 WP_003232221.1 patatin family protein -
  Bateq7PJ16_RS08490 (Bateq7PJ16_1674) sepM 1616095..1617120 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=207165 Bateq7PJ16_RS08460 WP_003221370.1 1611749..1612198(+) (ylbF) [Bacillus subtilis strain 7PJ-16]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=207165 Bateq7PJ16_RS08460 WP_003221370.1 1611749..1612198(+) (ylbF) [Bacillus subtilis strain 7PJ-16]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGTTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1