Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   SMA_1851 Genome accession   HE613569
Coordinates   1793091..1795568 (+) Length   825 a.a.
NCBI ID   CCF03142.1    Uniprot ID   -
Organism   Streptococcus macedonicus ACA-DC 198     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1788091..1800568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMA_1847 - 1790480..1791028 (-) 549 CCF03138.1 Colicin V production protein -
  SMA_1848 - 1791031..1791339 (-) 309 CCF03139.1 Hypothetical protein -
  SMA_1849 rnhC 1791461..1792363 (+) 903 CCF03140.1 Ribonuclease HIII -
  SMA_1850 lepB 1792380..1792973 (+) 594 CCF03141.1 Signal peptidase I -
  SMA_1851 recD/recD2/recDB 1793091..1795568 (+) 2478 CCF03142.1 RecD-like DNA helicase YrrC Machinery gene
  SMA_1852 - 1795803..1796306 (+) 504 CCF03143.1 putative membrane protein precursor -
  SMA_1853 dinB 1796362..1797459 (-) 1098 CCF03144.1 DNA polymerase IV -
  SMA_1854 pfl 1797685..1800009 (+) 2325 CCF03145.1 Pyruvate formate-lyase -
  SMA_1855 - 1800069..1800506 (+) 438 CCF03146.1 Hypothetical protein -

Sequence

Protein


Download         Length: 825 a.a.        Molecular weight: 92780.88 Da        Isoelectric Point: 4.4519

>NTDB_id=20686 SMA_1851 CCF03142.1 1793091..1795568(+) (recD/recD2/recDB) [Streptococcus macedonicus ACA-DC 198]
MEYFFSGTIDRIIFENASNFFKILLLEIEDTDSDFDDFEIIVTGTIADIIEGENYTFWGELTQHPKYGEQLRVTRYERSK
PTSSGLIKYFSSDHFKGIGKKTAEKIVQLYGDNTIDKILEDPSKLDSISGLSKENKDNFLTKLKLNYGTELILAKLAEYG
LTNRVAFEIFNQYKEDSLDIIQENPYQLVEDIQGIGFKIADQLAEQLGIEADAPQRFRAALVHSLFETSIERGDTYVEAR
DLLENAITTLEEARQIELDPAAVAKELSTLIAEDKVQNVGTKIFDNTLFYAESGIKKHLTRILDTPLNQNFSDVDLQEEI
ADVEEAFGISYDDVQKHAIKEALKSKVFILTGGPGTGKTTVINGLIAAYADLHQIDLEKKDIPIILAAPTGRAARRMNEL
TGLPSATIHRHLGLNGDNDYQAIDDYLDCDLIIIDEFSMVDTWLANQLFSSISSNTQVIIVGDSDQLPSVGPGQVLADLL
KIEALPQLALTKIFRQSEDSTIVTLANQMRLGKLPADFTQKKADRSYFEASAQYIPEIIPKIVSAAVKSGIDPQEIQILA
PMYRGAAGINRLNTIIQDLLNPLKDQLSFAFGEMNFRKDDKILHLINDAELNVFNGDIGYITDLIPAKYTESKQDELYMS
FDGTEVIYPRNEWHKITLAYAISIHKSQGSEFQVVILPITRQSHRLLQRNLIYTAITRSKSKLVMLGEIAAFDYAIKNEG
AKRNTYLVQRFTSSAQEESIDLQTEISQQTSPKTDNEAEKITSPTSPQTNISKEENIQLTLDIAENEQTQTEQEPKIYRL
TEENLAFINPMIGITQADIEQFFKK

Nucleotide


Download         Length: 2478 bp        

>NTDB_id=20686 SMA_1851 CCF03142.1 1793091..1795568(+) (recD/recD2/recDB) [Streptococcus macedonicus ACA-DC 198]
ATGGAATACTTCTTTTCTGGCACAATTGACCGTATTATTTTTGAAAATGCCAGTAATTTCTTTAAAATTTTATTGCTCGA
AATTGAGGATACCGATTCAGACTTTGATGATTTTGAAATCATTGTTACTGGAACAATTGCCGATATTATCGAGGGAGAAA
ATTATACGTTTTGGGGTGAATTAACGCAACACCCAAAATATGGCGAACAGCTCAGAGTCACACGTTACGAGCGCAGCAAA
CCAACTTCTTCTGGTCTTATTAAATATTTTTCAAGCGACCATTTCAAAGGAATTGGTAAAAAAACTGCTGAAAAAATTGT
GCAGCTTTACGGCGACAATACCATTGATAAAATCCTAGAAGACCCTAGTAAATTAGACAGTATTTCTGGGCTTTCTAAGG
AAAATAAAGACAACTTTTTAACCAAACTCAAGCTTAATTATGGTACAGAGCTCATTTTAGCCAAGTTGGCAGAGTATGGC
TTAACTAATCGTGTTGCCTTTGAAATTTTTAATCAATACAAGGAAGACAGTCTTGATATTATCCAAGAAAATCCTTATCA
ATTGGTCGAAGACATTCAAGGGATTGGGTTTAAAATCGCTGACCAACTCGCTGAACAATTAGGAATCGAAGCAGATGCCC
CTCAACGTTTTCGTGCCGCTCTCGTGCACAGTCTTTTTGAAACTTCTATTGAGCGAGGAGATACTTACGTCGAAGCGCGT
GATTTGCTTGAAAATGCCATTACCACCCTTGAAGAAGCTAGACAAATTGAGTTAGACCCCGCAGCCGTTGCCAAAGAATT
ATCAACGCTTATCGCTGAAGATAAGGTACAAAATGTCGGTACCAAAATTTTTGACAATACTCTTTTCTATGCTGAATCAG
GTATCAAAAAACACCTGACACGTATCCTTGATACGCCACTCAACCAAAACTTTTCAGATGTTGACTTGCAAGAAGAAATC
GCTGACGTTGAGGAAGCTTTCGGCATTTCTTACGATGATGTGCAAAAACATGCTATCAAAGAAGCGCTCAAGAGCAAGGT
GTTTATTTTGACTGGTGGTCCTGGCACGGGAAAAACGACTGTTATCAACGGTTTGATTGCTGCCTACGCAGACCTTCATC
AAATTGATCTTGAGAAAAAAGATATTCCTATCATCTTAGCAGCGCCAACAGGACGTGCTGCCCGCCGTATGAATGAATTA
ACAGGCTTGCCAAGTGCGACTATTCACCGCCATTTGGGGTTAAATGGTGATAACGACTACCAAGCTATTGATGACTATCT
CGACTGTGACTTGATTATCATTGATGAATTTTCAATGGTTGATACTTGGCTTGCCAATCAACTCTTTAGTTCCATTTCGT
CCAATACTCAAGTCATCATCGTTGGAGATAGTGACCAATTGCCGTCTGTCGGTCCTGGGCAAGTATTAGCTGATTTATTA
AAAATTGAAGCTCTTCCTCAACTAGCATTGACTAAAATCTTTAGACAATCGGAAGATTCAACCATTGTTACACTTGCTAA
TCAGATGAGACTTGGAAAATTACCAGCTGACTTCACACAAAAGAAAGCTGACCGTTCTTATTTTGAAGCAAGTGCACAAT
ATATCCCAGAAATAATTCCTAAAATTGTCAGCGCAGCTGTTAAGAGTGGCATTGACCCACAAGAAATACAAATTCTTGCC
CCAATGTACCGTGGCGCAGCTGGGATTAATCGACTTAATACCATTATTCAGGATTTACTTAACCCGCTTAAAGATCAACT
CTCGTTTGCCTTTGGTGAGATGAATTTCCGTAAGGATGACAAAATTCTCCACCTCATCAACGATGCTGAACTCAATGTTT
TCAATGGTGATATCGGCTATATTACAGACCTTATTCCTGCTAAATATACCGAATCCAAACAAGACGAGCTTTACATGTCT
TTTGACGGCACTGAAGTTATTTACCCTCGTAATGAATGGCATAAAATTACCCTTGCTTACGCTATATCAATCCACAAATC
ACAAGGTAGCGAATTTCAGGTTGTCATTTTGCCGATCACTCGCCAAAGTCACAGACTCTTACAACGTAACCTCATTTACA
CAGCTATCACCCGCTCTAAGAGTAAATTAGTGATGTTAGGGGAAATTGCCGCCTTTGATTACGCCATAAAAAACGAAGGC
GCTAAGCGCAACACCTATCTTGTTCAACGCTTTACAAGCTCCGCTCAAGAAGAAAGTATTGATTTACAAACTGAAATTTC
TCAACAAACATCACCTAAAACAGATAATGAAGCTGAGAAAATCACCTCTCCAACTTCTCCCCAAACAAATATTTCTAAAG
AAGAAAACATCCAACTGACACTAGATATTGCCGAAAATGAGCAAACACAAACAGAGCAAGAACCAAAAATCTATCGCTTG
ACAGAAGAAAACTTGGCATTTATCAACCCAATGATTGGCATTACCCAAGCCGACATTGAACAATTTTTTAAGAAATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(331-522)

Helix-hairpin-helix containing domain (HHH_RecD2)

(147-236)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-638)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-705)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

42.397

94.061

0.399

Multiple sequence alignment