Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SMA_1786 Genome accession   HE613569
Coordinates   1731613..1732398 (-) Length   261 a.a.
NCBI ID   CCF03077.1    Uniprot ID   -
Organism   Streptococcus macedonicus ACA-DC 198     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1726613..1737398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMA_1781 gatA 1727725..1729191 (-) 1467 CCF03072.1 Aspartyl-tRNA amidotransferase subunit A, Glutamyl-tRNA amidotransferase subunit A -
  SMA_1782 gatC 1729191..1729493 (-) 303 CCF03073.1 Aspartyl-tRNA amidotransferase subunit C, Glutamyl-tRNA amidotransferase subunit C -
  SMA_1783 - 1729597..1729725 (-) 129 Protein_1782 Hypothetical protein -
  SMA_1784 tnpA 1729742..1730998 (+) 1257 CCF03075.1 Transposase, IS204/IS1001/IS1096/IS1165 -
  SMA_1785 - 1731040..1731588 (-) 549 CCF03076.1 Nicotinamidase -
  SMA_1786 codY 1731613..1732398 (-) 786 CCF03077.1 GTP-sensing transcriptional pleiotropic repressor CodY Regulator
  SMA_1787 - 1732411..1732623 (+) 213 CCF03078.1 Hypothetical protein -
  SMA_1788 yfbQ 1732764..1733978 (-) 1215 CCF03079.1 Aspartate aminotransferase -
  SMA_1789 yhdW 1734015..1735781 (-) 1767 CCF03080.1 Glycerophosphoryl diester phosphodiesterase -
  SMA_1790 - 1736099..1736551 (+) 453 CCF03081.1 Universal stress protein family -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28865.01 Da        Isoelectric Point: 4.4076

>NTDB_id=20680 SMA_1786 CCF03077.1 1731613..1732398(-) (codY) [Streptococcus macedonicus ACA-DC 198]
MSNLLEKTRKITSILQRSVDSLDTELPYNTMADQLADIIDCNVCIINGGGNLLGYAMKYKTNTDRVEEFFDAKQFPESYV
KAASRVYDTEANLSVDNELTIFPVESKDIYPDGLTTIAPIYGGGMRLGSLIIWRNDKEFLEDDLILVEIASTVVGIQLLN
LQTENLEETIRKQTAVNMAINTLSYSEMKAVSAILGELDGTEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFDKLKAYD

Nucleotide


Download         Length: 786 bp        

>NTDB_id=20680 SMA_1786 CCF03077.1 1731613..1732398(-) (codY) [Streptococcus macedonicus ACA-DC 198]
ATGTCGAATTTATTAGAAAAAACACGAAAGATTACATCAATTTTGCAACGCTCTGTTGACAGCTTAGACACTGAATTGCC
ATATAATACAATGGCTGATCAATTAGCTGATATCATTGATTGTAACGTTTGCATCATCAACGGAGGAGGTAACCTTCTTG
GTTATGCAATGAAGTATAAAACAAATACTGACCGCGTAGAGGAATTCTTTGATGCCAAACAATTTCCGGAAAGCTACGTT
AAAGCGGCTAGTCGTGTTTACGACACAGAGGCAAACTTGTCTGTGGATAATGAATTGACTATTTTCCCAGTAGAATCAAA
AGACATCTATCCTGATGGCTTGACAACTATTGCACCAATTTATGGTGGAGGTATGCGTCTAGGTTCTCTTATCATTTGGC
GTAATGATAAAGAGTTTTTAGAAGATGATTTGATTCTTGTTGAAATTGCCTCAACAGTAGTTGGTATCCAATTACTTAAT
CTTCAAACTGAAAATCTTGAAGAAACCATTCGTAAACAAACAGCTGTTAATATGGCTATTAACACGCTATCTTACTCAGA
AATGAAAGCTGTATCAGCTATTTTGGGTGAATTAGACGGTACAGAAGGTCGCTTAACTGCATCAGTTATTGCTGACCGCA
TTGGTATCACACGTTCAGTTATTGTTAATGCCCTACGTAAATTGGAATCTGCGGGGATTATCGAAAGTCGTTCATTGGGT
ATGAAAGGAACTTACCTTAAAGTCATCAATGAAGGTATCTTCGATAAATTAAAGGCATATGATTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

66.148

98.467

0.651
  codY Bacillus subtilis subsp. subtilis str. 168

52.227

94.636

0.494

Multiple sequence alignment