Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BSR08_RS05120 Genome accession   NZ_CP018184
Coordinates   960869..961648 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain KH2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 955869..966648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR08_RS05100 (BSR08_05175) trmFO 956562..957869 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BSR08_RS05105 (BSR08_05180) xerC 957937..958851 (+) 915 WP_014479777.1 tyrosine recombinase XerC -
  BSR08_RS05110 (BSR08_05185) clpQ 958864..959409 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  BSR08_RS05115 (BSR08_05190) hslU 959417..960829 (+) 1413 WP_255220399.1 HslU--HslV peptidase ATPase subunit -
  BSR08_RS05120 (BSR08_05195) codY 960869..961648 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BSR08_RS05125 (BSR08_05200) flgB 962028..962417 (+) 390 WP_014479778.1 flagellar basal body rod protein FlgB -
  BSR08_RS05130 (BSR08_05205) flgC 962417..962869 (+) 453 WP_014479779.1 flagellar basal body rod protein FlgC -
  BSR08_RS05135 (BSR08_05210) fliE 962880..963200 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  BSR08_RS05140 (BSR08_05215) fliF 963246..964843 (+) 1598 Protein_1008 flagellar basal-body MS-ring/collar protein FliF -
  BSR08_RS05145 (BSR08_05220) fliG 964856..965872 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  BSR08_RS05150 (BSR08_05225) fliH 965865..966617 (+) 753 WP_014479782.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=206691 BSR08_RS05120 WP_003220850.1 960869..961648(+) (codY) [Bacillus subtilis strain KH2]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=206691 BSR08_RS05120 WP_003220850.1 960869..961648(+) (codY) [Bacillus subtilis strain KH2]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment