Detailed information NTG0206559

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: BSF20_RS18135
• Genome accession: NZ_CP018152
• Coordinates: 3622035..3622814 (-)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus amyloliquefaciens strain LM2303
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 3617035..3627814

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BSF20_RS18105 (BSF20_17745)	fliH	3617079..3617834 (-)	756	WP_003154255.1	flagellar assembly protein FliH	-
BSF20_RS18110 (BSF20_17750)	fliG	3617827..3618843 (-)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
BSF20_RS18115 (BSF20_17755)	fliF	3618856..3620466 (-)	1611	WP_003154257.1	flagellar basal-body MS-ring/collar protein FliF	-
BSF20_RS18120 (BSF20_17760)	fliE	3620509..3620829 (-)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
BSF20_RS18125 (BSF20_17765)	flgC	3620840..3621292 (-)	453	WP_003154259.1	flagellar basal body rod protein FlgC	-
BSF20_RS18130 (BSF20_17770)	flgB	3621292..3621681 (-)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
BSF20_RS18135 (BSF20_17775)	codY	3622035..3622814 (-)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
BSF20_RS18140 (BSF20_17780)	hslU	3622852..3624255 (-)	1404	WP_003154265.1	HslU--HslV peptidase ATPase subunit	-
BSF20_RS18145 (BSF20_17785)	hslV	3624272..3624817 (-)	546	WP_003154267.1	ATP-dependent protease subunit HslV	-
BSF20_RS18150 (BSF20_17790)	xerC	3624833..3625750 (-)	918	WP_007409774.1	tyrosine recombinase XerC	-
BSF20_RS18155 (BSF20_17795)	trmFO	3625820..3627127 (-)	1308	WP_072588509.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=206559 BSF20_RS18135 WP_003154263.1 3622035..3622814(-) (codY) [Bacillus amyloliquefaciens strain LM2303]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=206559 BSF20_RS18135 WP_003154263.1 3622035..3622814(-) (codY) [Bacillus amyloliquefaciens strain LM2303]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCTCTGGGTATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471