Detailed information NTG0020645

Bioinformatically predicted

Overview

• Name: luxP
• Type: Regulator
• Locus tag: VC_RS16880
• Genome accession: NC_002506
• Coordinates: 683063..684157 (-)
• Length: 364 a.a.
• NCBI ID: WP_000823678.1
• Uniprot ID: Q9KLK6
• Organism: Vibrio cholerae O1 biovar El Tor str. N16961
• Function: autoinducer sensor (predicted from homology) Competence regulation

Genomic Context

Location: 678063..689157

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VC_RS16860 (VC_A0732)	-	678403..678801 (+)	399	WP_000831416.1	YgiW/YdeI family stress tolerance OB fold protein	-
VC_RS16865 (VC_A0734)	-	679053..679571 (+)	519	WP_000914961.1	hypothetical protein	-
VC_RS16870 (VC_A0735)	-	679815..680480 (+)	666	WP_000268204.1	PilZ domain-containing protein	-
VC_RS16875 (VC_A0736)	luxQ	680472..683045 (-)	2574	WP_001026306.1	quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ	Regulator
VC_RS16880 (VC_A0737)	luxP	683063..684157 (-)	1095	WP_000823678.1	autoinducer 2-binding periplasmic protein LuxP	Regulator
VC_RS16885 (VC_A0738)	traF	684369..685529 (-)	1161	WP_001025860.1	conjugal transfer protein TraF	-
VC_RS16890 (VC_A0739)	-	685631..685936 (-)	306	WP_000429067.1	GIY-YIG nuclease family protein	-
VC_RS16895 (VC_A0740)	-	685953..686603 (-)	651	WP_001025631.1	YceH family protein	-
VC_RS16900	-	686645..686841 (-)	197	Protein_672	hypothetical protein	-
VC_RS16905 (VC_A0741)	-	687029..687349 (+)	321	WP_001089529.1	DUF496 family protein	-
VC_RS16910 (VC_A0743)	-	687762..688013 (+)	252	WP_001882582.1	YgjV family protein	-

Sequence

Protein

• Length: 364 a.a.
• Molecular weight: 41196.81 Da
• Isoelectric Point: 6.3129

>NTDB_id=20645 VC_RS16880 WP_000823678.1 683063..684157(-) (luxP) [Vibrio cholerae O1 biovar El Tor str. N16961]
MKRKLISPLFLIAALFSSTGQADSLKGYWHYDEFLAEFPEQRPISELFAQTVRDKPSALTVAQEQPVIISVVYPGQQISD
YWVRNIKAFEKRMDALGIRYQINQVFTRPNLDTRQQSVSLMEALKNKSDYLIFTLDTTRHRKFIEHVLHSSETKLILQNI
TTPVKDWQGKQPMMYIGFDHEYGAQLLAQYYQAHAPKKPYSVLYFSEGYISEARGDTFIQDMNAVHHFPLASSYYTKATE
QSGYEATLNIVKNNPEIGFIYACATDVALGAAQALKELNRQDILVNGWGGGSAELEALAKGELDVTVMRMNDDTGVAMAE
AIKWDLEGKSVPLVYSGDFEVVTKQDSAARIAELKARAFRYSDR

Nucleotide

• Length: 1095 bp

>NTDB_id=20645 VC_RS16880 WP_000823678.1 683063..684157(-) (luxP) [Vibrio cholerae O1 biovar El Tor str. N16961]
ATGAAAAGAAAGCTAATATCTCCGCTGTTTCTGATAGCAGCACTCTTCAGCTCAACTGGTCAAGCCGATTCATTAAAAGG
CTATTGGCATTATGATGAATTTCTTGCTGAGTTCCCTGAACAGCGGCCAATTTCCGAGCTTTTTGCTCAAACAGTTCGTG
ATAAACCGAGTGCGTTGACGGTGGCGCAAGAACAACCCGTCATTATTTCGGTGGTCTATCCCGGACAGCAAATTTCTGAC
TATTGGGTTCGCAACATCAAAGCGTTTGAAAAGCGAATGGATGCTTTGGGGATTCGCTATCAAATCAATCAGGTGTTTAC
TCGCCCGAATCTTGATACTCGCCAGCAGAGTGTTTCCTTGATGGAAGCGCTGAAAAATAAGAGCGACTATCTGATTTTTA
CCTTAGATACCACCCGTCACCGCAAATTCATTGAGCATGTGCTGCACTCCTCCGAAACGAAACTGATTTTGCAAAACATC
ACGACGCCAGTCAAAGATTGGCAAGGCAAGCAGCCCATGATGTACATCGGTTTTGATCATGAGTACGGTGCGCAATTATT
GGCGCAATATTACCAAGCACATGCTCCGAAAAAGCCGTACTCAGTACTTTATTTTTCCGAGGGGTATATCAGTGAAGCGC
GGGGAGACACCTTCATTCAAGATATGAACGCGGTGCACCATTTTCCGTTGGCTTCTTCCTATTACACCAAGGCAACCGAA
CAAAGTGGCTATGAAGCGACCCTAAACATCGTCAAGAATAATCCAGAAATTGGCTTTATTTACGCCTGTGCGACGGACGT
CGCTTTGGGAGCTGCGCAGGCACTGAAAGAGCTGAATCGACAAGATATTCTGGTCAATGGTTGGGGAGGCGGTTCGGCAG
AGCTTGAAGCGCTTGCCAAAGGAGAATTGGATGTCACTGTGATGCGTATGAATGACGATACGGGTGTGGCGATGGCTGAA
GCGATTAAATGGGATTTGGAAGGGAAATCCGTACCTTTGGTCTATTCAGGCGATTTTGAAGTGGTCACCAAACAAGATTC
AGCAGCACGTATTGCAGAACTGAAAGCTCGGGCTTTCCGTTATTCGGATCGTTAG

Domains

Predicted by InterproScan.

• Periplasmic binding protein domain (Peripla_BP_4) (69-323)

3D structure

• AlphaFold DB: Q9KLK6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
luxP	Vibrio cholerae strain A1552	100	100	1