Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   BP422_RS04750 Genome accession   NZ_CP018145
Coordinates   964608..966869 (+) Length   753 a.a.
NCBI ID   WP_088906771.1    Uniprot ID   A0A220MD23
Organism   Brevibacillus formosus strain NF2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 959608..971869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BP422_RS04730 (BP422_04630) - 960334..961089 (+) 756 WP_088906768.1 tRNA threonylcarbamoyladenosine dehydratase -
  BP422_RS04735 (BP422_04635) - 961096..962454 (+) 1359 WP_088906769.1 replication-associated recombination protein A -
  BP422_RS31285 - 962471..962644 (-) 174 WP_162837766.1 hypothetical protein -
  BP422_RS04740 (BP422_04640) cymR 962742..963161 (+) 420 WP_017247589.1 cysteine metabolism transcriptional regulator CymR -
  BP422_RS04745 (BP422_04645) - 963189..964334 (+) 1146 WP_088906770.1 cysteine desulfurase family protein -
  BP422_RS04750 (BP422_04650) recD2 964608..966869 (+) 2262 WP_088906771.1 ATP-dependent RecD-like DNA helicase Machinery gene
  BP422_RS04755 (BP422_04655) - 966944..967423 (+) 480 WP_088906772.1 PRC-barrel domain-containing protein -
  BP422_RS04760 (BP422_04660) - 967458..967664 (+) 207 WP_007717618.1 hypothetical protein -
  BP422_RS04765 (BP422_04665) - 967692..967886 (+) 195 WP_236841423.1 hypothetical protein -
  BP422_RS04770 (BP422_04670) - 968001..968687 (-) 687 WP_088906774.1 TerC family protein -
  BP422_RS04775 (BP422_04675) - 969068..970132 (+) 1065 WP_088906775.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 753 a.a.        Molecular weight: 85224.53 Da        Isoelectric Point: 5.2254

>NTDB_id=206357 BP422_RS04750 WP_088906771.1 964608..966869(+) (recD2) [Brevibacillus formosus strain NF2]
MDEQQSISLFAENFIRGFVSQEIFYKEETWYGVIRLKIEETTESIKESEVIIVGNFPRPHPDELYTFYGEWKTHARFGQQ
YVAKRYERETPKTLAGVERYLASGLFQGIGKKMAKRIVEQLGVDALSIIADFPERLAEVPGISEQRAKTIYDSVVEHRSL
ESAMVFLYDFGIGVNMALRIYQTYKLETMTVLKEEPYRLIEDVVGIGFKRADDIARATGIAASSEERVKAAALFVLQEAS
YSEGHVYLPVEELCEKTMRLLEECGGHVFSGDDIRLAVEALFVASKIAWEDERVYLPSLFFAELGLAKRLRHFAARDEFG
TFPTSEFYRALGAVEDELGITYAQTQRDAIEQAIKAGLMLLTGGPGTGKTTVIRGICRVFSQLHGLSLDLKKYNEENPFP
IVLVAPTGRAAKRMTETTGLPAMTIHRLLGYKGESFEHDAEHPIRGRLLIVDEMSMVDIWLANQLFRAVPDDMQIIMVGD
PDQLPSVGPGNVLFDMIRSGLLSLVQLTEIYRQAEESTIIRLAHDVRKGNVPADLLHTTPDRRFFTSLPQEVPEAVKQIC
FGAVKKGYTAKDVQVLAPIYKGNAGVNRLNEELQELFNPKTPQKREVTFGETTFRTGDKVLQLVNNAEEQVFNGDMGEIV
AIFFPNENAENQEMLVAAFDNREVVYKRSDYHQLTLAYCCSVHKSQGSEFPIVIMPFVKSYYRMLRRKLVYTGITRSKSF
LIMCGEPDAFRAAVESDEEGVRYSYLEQRLKQE

Nucleotide


Download         Length: 2262 bp        

>NTDB_id=206357 BP422_RS04750 WP_088906771.1 964608..966869(+) (recD2) [Brevibacillus formosus strain NF2]
ATGGACGAGCAGCAGTCAATCTCGCTGTTTGCGGAAAACTTCATTCGGGGATTTGTTTCTCAAGAAATTTTTTACAAGGA
AGAAACCTGGTACGGAGTTATCCGTCTTAAGATAGAAGAGACTACAGAATCGATTAAAGAATCGGAAGTCATTATTGTCG
GTAATTTTCCTCGTCCGCATCCAGACGAGCTGTACACCTTTTACGGTGAATGGAAAACACACGCCCGTTTTGGACAGCAG
TACGTAGCAAAGCGCTATGAACGTGAAACGCCGAAAACATTGGCCGGGGTTGAGCGCTACTTAGCCAGTGGCTTGTTTCA
AGGGATCGGAAAGAAGATGGCCAAACGAATTGTCGAGCAGTTAGGGGTAGATGCGCTGTCGATTATCGCGGACTTCCCGG
AGCGATTGGCTGAGGTACCAGGCATTTCTGAACAACGTGCCAAAACGATCTATGATTCAGTAGTTGAGCATCGTTCCTTG
GAAAGTGCCATGGTTTTCTTGTACGACTTCGGCATTGGTGTGAACATGGCGCTGCGTATTTATCAGACCTACAAGCTGGA
AACGATGACAGTGCTGAAGGAAGAGCCTTACCGGTTGATTGAGGATGTCGTAGGAATCGGCTTTAAACGGGCAGATGACA
TTGCACGAGCAACTGGAATCGCTGCTTCCTCAGAAGAACGTGTGAAGGCGGCGGCACTCTTTGTGTTGCAAGAGGCTTCG
TATTCAGAAGGACATGTTTATTTGCCTGTGGAGGAGCTTTGTGAAAAAACGATGCGCCTTCTTGAGGAGTGCGGGGGGCA
CGTCTTTTCTGGTGACGATATTCGACTGGCAGTGGAAGCCCTGTTTGTGGCGAGCAAAATTGCCTGGGAAGATGAGAGGG
TGTATTTGCCCTCCCTGTTTTTTGCCGAGCTCGGTTTAGCTAAAAGACTGCGTCACTTCGCTGCGCGGGATGAATTCGGT
ACGTTCCCGACATCGGAATTTTACCGTGCATTAGGGGCGGTCGAGGATGAGCTGGGGATTACGTATGCCCAGACGCAGCG
TGATGCCATTGAACAAGCGATCAAAGCAGGTCTGATGCTGTTGACAGGGGGACCTGGTACGGGGAAAACGACAGTCATTC
GCGGGATATGTCGTGTCTTTTCTCAGCTCCATGGATTGTCTTTGGACTTGAAAAAATACAACGAAGAAAATCCGTTCCCA
ATCGTTCTTGTGGCTCCTACTGGACGTGCAGCAAAACGTATGACAGAGACTACGGGTTTACCAGCAATGACCATCCATCG
CTTGCTTGGTTACAAAGGGGAGAGCTTTGAGCATGACGCGGAGCACCCAATCCGTGGCCGGCTATTAATTGTGGATGAAA
TGTCCATGGTCGATATCTGGCTCGCAAATCAATTGTTTCGGGCGGTCCCAGACGACATGCAGATCATCATGGTAGGTGAC
CCTGACCAGTTGCCTTCCGTAGGACCAGGCAACGTCCTGTTTGATATGATCCGATCTGGATTACTGTCGTTGGTACAGCT
GACAGAAATTTATCGGCAAGCAGAAGAATCTACCATTATTCGGTTGGCCCATGATGTACGCAAGGGGAATGTACCGGCGG
ATTTGCTTCACACCACCCCGGATCGGCGATTCTTCACAAGTTTGCCACAAGAAGTTCCGGAAGCAGTGAAACAAATTTGC
TTCGGAGCCGTAAAAAAAGGATATACGGCAAAAGATGTTCAGGTATTAGCCCCTATCTATAAAGGTAATGCCGGTGTGAA
CCGGTTGAATGAAGAATTGCAGGAGCTGTTTAATCCGAAAACGCCGCAAAAGCGTGAAGTTACTTTCGGAGAGACGACTT
TCCGTACAGGAGACAAGGTTCTGCAATTGGTGAACAATGCCGAAGAACAGGTGTTTAATGGTGACATGGGTGAGATCGTC
GCCATCTTTTTCCCGAATGAAAATGCGGAGAACCAGGAGATGCTGGTCGCTGCCTTTGATAACAGGGAAGTGGTGTACAA
GCGTTCGGATTACCATCAGCTGACGCTTGCCTACTGCTGCTCGGTTCATAAGTCTCAAGGCAGCGAATTTCCGATTGTGA
TCATGCCGTTTGTCAAAAGCTACTACCGTATGCTCAGACGCAAGTTGGTCTATACCGGGATTACCCGGAGCAAATCATTC
CTCATCATGTGTGGAGAGCCGGATGCGTTCCGTGCTGCTGTAGAGTCTGATGAGGAGGGGGTACGGTACAGTTACCTGGA
GCAACGGCTAAAGCAAGAGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

Helix-hairpin-helix domain (HHH_5)

(107-152)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(677-723)

AAA domain (AAA_30)

(342-535)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-656)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A220MD23

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

48.529

99.336

0.482

Multiple sequence alignment