Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   CLD04_RS21975 Genome accession   NZ_CP023257
Coordinates   638547..638825 (-) Length   92 a.a.
NCBI ID   WP_026113660.1    Uniprot ID   -
Organism   Bacillus subtilis strain TLO3     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 633547..643825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLD04_RS03440 (CLD04_03440) cesA 634828..635730 (-) 903 WP_095843513.1 carboxylesterase -
  CLD04_RS03445 (CLD04_03445) ydfK 635933..636622 (-) 690 WP_019712443.1 DUF554 domain-containing protein -
  CLD04_RS03450 (CLD04_03450) ydfL 636712..637524 (-) 813 WP_003234177.1 MerR family transcriptional regulator -
  CLD04_RS21970 - 638085..638408 (-) 324 WP_017695977.1 hypothetical protein -
  CLD04_RS21975 rapF 638547..638825 (-) 279 WP_026113660.1 hypothetical protein Regulator
  CLD04_RS03460 (CLD04_03460) - 639267..639992 (+) 726 WP_017695978.1 hypothetical protein -
  CLD04_RS03465 (CLD04_03465) - 640258..641499 (-) 1242 Protein_641 IS1182 family transposase -
  CLD04_RS03470 (CLD04_03470) mneP 641626..642519 (-) 894 WP_015252717.1 manganese transporter MneP -
  CLD04_RS03475 (CLD04_03475) ydfN 642994..643614 (+) 621 WP_095843514.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 11264.99 Da        Isoelectric Point: 4.8550

>NTDB_id=205846 CLD04_RS21975 WP_026113660.1 638547..638825(-) (rapF) [Bacillus subtilis strain TLO3]
MRDEVKEEIELMKENQDAVVYYQLLKFRHELMLDYLHPDNVRDIEKQYEKLRELKNNNQNLTGMLEYYFYFFMGCTISGS
MNWLLIKLLQTS

Nucleotide


Download         Length: 279 bp        

>NTDB_id=205846 CLD04_RS21975 WP_026113660.1 638547..638825(-) (rapF) [Bacillus subtilis strain TLO3]
ATGAGGGATGAAGTTAAGGAAGAAATCGAGCTAATGAAGGAAAACCAAGACGCCGTCGTTTACTACCAACTATTAAAATT
CCGTCATGAATTAATGTTGGACTATCTCCATCCTGACAATGTCAGAGATATAGAGAAACAGTATGAAAAGCTAAGAGAAC
TGAAAAATAACAATCAGAACCTCACAGGAATGTTAGAATACTATTTTTATTTTTTTATGGGATGTACTATTTCAGGCAGC
ATGAACTGGCTTCTAATTAAACTGTTACAGACAAGCTGA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(1-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

46.753

83.696

0.391