Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   DN94_07710 Genome accession   CP007565
Coordinates   1494421..1496829 (+) Length   802 a.a.
NCBI ID   AHX75529.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain 138spar     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1489421..1501829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN94_07690 - 1491823..1492365 (-) 543 AHX75525.1 colicin V production protein -
  DN94_07695 - 1492368..1492679 (-) 312 AHX75526.1 hypothetical protein -
  DN94_07700 - 1492790..1493683 (+) 894 AHX75527.1 ribonuclease HIII -
  DN94_07705 - 1493699..1494292 (+) 594 AHX75528.1 signal peptidase -
  DN94_07710 recD/recD2/recDB 1494421..1496829 (+) 2409 AHX75529.1 exodeoxyribonuclease V subunit alpha Machinery gene
  DN94_07715 - 1496943..1497425 (+) 483 AHX75530.1 hypothetical protein -
  DN94_07725 - 1498775..1501087 (+) 2313 AHX75531.1 formate acetyltransferase -
  DN94_07730 - 1501188..1501562 (+) 375 AHX75532.1 FMN-binding protein -

Sequence

Protein


Download         Length: 802 a.a.        Molecular weight: 90512.84 Da        Isoelectric Point: 4.7192

>NTDB_id=20583 DN94_07710 AHX75529.1 1494421..1496829(+) (recD/recD2/recDB) [Streptococcus agalactiae strain 138spar]
MEVFFTGTIERIIFENASNFFKILLLEIEDTDSDFDDVEVIITGTIADVIEGEEYTFWGTLTQHPKYGEQLQSVRYERAK
PTSGGLVKYFSSEQFKGIGKKTAQRIVELYGDNTIDKILESPEQLSTISGLSKINREAFIAKLKLNYGTEQVLAKLAEYG
LSNRAAIQIFDHYKEESLEVINENPYQLVEDIQGIGFKIADQLAEQVGIESDSPKRFRAAIIHTLVESSMEQGDTYIEAR
TLLEKTITLLEEARQIELDPSIVAKELTNLIAEDKVQHIGTKIFSNTLFFAEEGIKKNLQRILNQPLDKQLSHKDIDREI
RDIQKSLNIHYDNIQEKAIREALLSKVFILTGGPGTGKTTVINGIIEAYSELHHIDYIPIVLAAPTGRAARRMNELTGLP
SATIHRHLGLNGDSDYQSLDDYLDCSLIIIDEFSMVDTWLANQLFDALDSHTQIIIVGDSDQLPSVGPGQVLADLLNINA
LPHVKLEKIFRQSEESTIVTLANQMRQGFLPEDFTAKKADRSYFEASANIIPNMISKIVQSALKSGIEAHEIQILAPMYR
GQAGINNLNLIMQNLLNPLKDNNQFTFNDINFRIGDKVLHLVNDTELNVFNGDIGYITDLIPAKYTESKQDEIYMTFDGQ
EVIYQRKEWLKITLAYAMSIHKSQGSEFQVVILPITRQSGRMLQRNLIYTAITRSKSKLILLGEIGAFDFAVKNEGAKRN
TYLIERFENKQEIANSQKIEDSSIDQKTDSTIINTSIPKTATPIEQTNLSKITYRLTEENYLTIDPMIGINQQDISAIFD
SK

Nucleotide


Download         Length: 2409 bp        

>NTDB_id=20583 DN94_07710 AHX75529.1 1494421..1496829(+) (recD/recD2/recDB) [Streptococcus agalactiae strain 138spar]
ATGGAAGTATTTTTTACAGGAACCATTGAACGCATTATATTTGAAAATGCCAGCAATTTTTTTAAAATATTACTTCTGGA
AATCGAAGATACGGATAGCGATTTTGATGATGTAGAAGTAATTATTACTGGTACTATAGCCGACGTTATAGAGGGAGAAG
AATATACTTTTTGGGGAACACTAACCCAACATCCAAAATACGGCGAGCAACTACAAAGTGTACGCTATGAAAGAGCCAAG
CCTACTTCAGGTGGCCTTGTGAAATACTTTTCTAGCGAACAATTTAAAGGAATTGGTAAAAAGACTGCCCAACGCATCGT
AGAACTCTATGGAGATAATACCATTGATAAAATCCTTGAATCCCCTGAACAGTTAAGTACAATCTCAGGACTATCAAAAA
TTAATAGAGAAGCATTCATCGCTAAACTGAAACTCAATTATGGAACAGAGCAAGTTTTAGCTAAACTCGCTGAATATGGG
TTAAGCAATCGTGCTGCTATTCAAATATTTGATCACTATAAAGAAGAATCACTTGAAGTGATAAACGAAAATCCTTATCA
ACTTGTTGAGGATATCCAAGGTATCGGTTTTAAAATAGCTGACCAACTTGCTGAACAAGTCGGTATTGAAAGTGATTCTC
CTAAACGCTTTCGTGCTGCTATTATTCATACTTTAGTTGAGTCTTCTATGGAGCAAGGTGATACCTATATTGAGGCTCGT
ACTCTCTTGGAAAAAACCATTACTCTCCTTGAAGAAGCTCGTCAAATCGAACTAGATCCTTCAATTGTTGCTAAGGAATT
GACAAATTTAATTGCAGAAGATAAAGTGCAACATATTGGAACTAAAATTTTTAGTAATACTCTATTTTTTGCCGAAGAAG
GCATCAAAAAAAACTTACAACGAATACTAAATCAGCCCCTTGATAAACAACTAAGTCACAAAGATATTGACCGTGAAATC
AGAGATATTCAAAAATCTTTAAATATCCACTACGATAATATCCAAGAAAAAGCTATTAGAGAAGCTTTACTAAGTAAGGT
ATTTATCTTAACTGGTGGCCCAGGAACAGGTAAAACAACAGTTATAAATGGTATTATTGAAGCCTATTCCGAGTTACATC
ATATTGATTATATTCCTATTGTACTTGCTGCTCCTACAGGTCGTGCTGCTAGACGCATGAATGAACTTACCGGTTTACCG
AGTGCTACTATTCATAGACATTTGGGATTAAACGGAGATAGTGACTATCAAAGTCTAGATGACTATCTAGATTGTTCCTT
AATTATCATTGATGAATTTTCAATGGTTGACACTTGGCTTGCTAATCAATTATTTGACGCTTTGGACTCGCACACACAAA
TTATTATTGTCGGAGATAGTGATCAATTACCGTCTGTAGGTCCAGGACAAGTTCTAGCAGATCTTTTAAATATAAATGCA
CTTCCACACGTTAAGCTTGAAAAGATTTTTAGACAATCAGAAGAATCAACTATTGTGACTTTAGCTAATCAAATGAGGCA
GGGCTTTTTGCCAGAGGACTTCACAGCTAAAAAAGCCGATCGCTCATACTTTGAAGCATCTGCTAATATCATCCCAAATA
TGATTTCTAAAATTGTTCAATCTGCACTTAAGAGCGGTATTGAAGCTCATGAAATTCAAATTTTAGCTCCTATGTATCGC
GGCCAAGCAGGTATTAATAATCTTAACCTTATCATGCAAAATCTCCTCAATCCATTAAAAGATAATAACCAATTTACTTT
TAATGATATAAATTTCCGAATAGGAGATAAAGTGTTACATTTAGTCAACGATACAGAGCTTAATGTTTTTAATGGGGATA
TTGGTTACATAACGGATCTTATACCAGCTAAATATACTGAGAGCAAGCAAGATGAGATTTATATGACTTTTGATGGTCAA
GAAGTTATCTACCAACGCAAAGAATGGCTTAAAATAACACTAGCCTATGCTATGAGTATTCATAAATCACAGGGTTCTGA
ATTTCAAGTTGTTATTCTGCCAATAACGAGACAGAGTGGTCGAATGTTACAGCGAAACCTTATTTATACAGCTATTACGA
GATCTAAAAGTAAACTAATACTTTTAGGAGAAATTGGTGCATTTGATTTCGCTGTTAAAAACGAGGGAGCAAAGCGCAAT
ACTTATCTGATAGAAAGATTTGAAAACAAGCAAGAAATAGCTAATTCTCAAAAAATTGAAGATAGTTCAATAGATCAAAA
GACTGACAGCACAATAATTAATACGTCCATTCCAAAAACAGCAACGCCAATTGAGCAGACTAATCTTTCAAAAATAACTT
ATCGCCTAACTGAAGAAAATTATTTAACAATCGATCCAATGATTGGTATTAATCAACAAGATATAAGTGCAATTTTTGAT
AGTAAATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(655-702)

AAA domain (AAA_30)

(332-516)

Helix-hairpin-helix containing domain (HHH_RecD2)

(147-236)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(568-634)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

43.391

93.392

0.405

Multiple sequence alignment