Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   XF_RS05000 Genome accession   NC_002488
Coordinates   1124637..1126157 (+) Length   506 a.a.
NCBI ID   WP_010893691.1    Uniprot ID   Q9PE49
Organism   Xylella fastidiosa 9a5c     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1119637..1131157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XF_RS04970 (XF1173) rpsM 1120343..1120699 (+) 357 WP_010893686.1 30S ribosomal protein S13 -
  XF_RS04975 (XF1174) rpsK 1120715..1121107 (+) 393 WP_010893687.1 30S ribosomal protein S11 -
  XF_RS04980 (XF1175) rpsD 1121122..1121748 (+) 627 WP_010893688.1 30S ribosomal protein S4 -
  XF_RS04985 (XF1176) rpoA 1121803..1122801 (+) 999 WP_004090142.1 DNA-directed RNA polymerase subunit alpha -
  XF_RS04990 (XF1177) rplQ 1122931..1123311 (+) 381 WP_010893689.1 50S ribosomal protein L17 -
  XF_RS04995 (XF1178) - 1124366..1124626 (+) 261 WP_031336901.1 accessory factor UbiK family protein -
  XF_RS05000 (XF1179) comM 1124637..1126157 (+) 1521 WP_010893691.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  XF_RS05005 (XF1181) - 1128679..1129812 (+) 1134 WP_010893693.1 esterase/lipase family protein -
  XF_RS05010 (XF1182) - 1129813..1130865 (+) 1053 WP_010893694.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54480.62 Da        Isoelectric Point: 8.0750

>NTDB_id=20583 XF_RS05000 WP_010893691.1 1124637..1126157(+) (comM) [Xylella fastidiosa 9a5c]
MSLALVHSRARAGVFAPSVRVEVHLSGGLPATQIVGLPEAAVRESRDRVRAALLCACFEYPARRITINLAPADLPKEGGR
FDLPIALGILAASGQLPLDALAGKEFLGELALTGELRSVDSVLPAALAASQAGHWLVIPESNGAEAAIAGCCEAYTARTL
LEVCAGLCGKTLLLAAQRFEVKADVLHDIPDISDVRGQEEARRVLEIAAAGGHHLLLIGSPGCGKTLLASRLPGLLPPAS
EQEALESASIASVSGHDLNLTHWRRRPYRAPHHSASAVALIGGGGQARPGEISLAHNGVLFMDELPEWQRKTLEALREPM
ESGVVTIARATRSVDYPARFQLVAAMNPCPCGWAGDSSGRCQCGVDAIRRYRRRISGPLLDRIDLQLEIPRLAPQLLRPS
TPRGEHSVTVRRRVTDARTLQYNRQAGLNAHLGQAATERHCCLDVIDQQLLERAIEQLQLSARSMQRILRVARTIADLDG
STLITSMHLHEAIGYRRFDRTAFGIA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=20583 XF_RS05000 WP_010893691.1 1124637..1126157(+) (comM) [Xylella fastidiosa 9a5c]
ATGAGCTTGGCTTTGGTGCATAGCCGTGCTCGTGCTGGAGTTTTTGCACCCTCAGTTAGGGTTGAAGTACATTTGTCGGG
TGGTCTGCCTGCAACACAGATCGTTGGTTTGCCTGAGGCTGCTGTACGTGAATCTCGAGATCGAGTGCGTGCCGCGTTAT
TGTGTGCTTGCTTTGAATATCCGGCCCGACGTATCACCATTAATTTGGCGCCTGCTGACTTACCGAAGGAGGGCGGGCGC
TTTGATTTGCCGATTGCATTAGGAATCTTGGCCGCCAGTGGTCAATTGCCACTCGATGCTTTAGCAGGTAAGGAGTTCCT
CGGTGAACTTGCACTCACTGGAGAACTGCGTTCGGTTGACAGTGTGCTACCTGCGGCTTTAGCTGCATCACAGGCAGGAC
ACTGGCTGGTGATACCAGAAAGTAATGGTGCTGAAGCAGCAATCGCAGGGTGTTGTGAAGCTTATACTGCTCGAACTCTA
CTTGAGGTTTGTGCTGGCTTGTGCGGTAAAACATTATTGCTGGCTGCTCAGAGGTTCGAAGTTAAGGCCGATGTATTGCA
TGATATTCCTGATATTTCTGACGTGCGCGGCCAAGAGGAGGCACGCCGTGTTCTTGAAATTGCTGCGGCTGGTGGACATC
ATTTGTTGCTGATTGGTAGTCCTGGTTGTGGTAAAACTCTTTTAGCCTCAAGATTACCAGGCTTATTACCGCCAGCAAGC
GAGCAAGAAGCATTGGAGAGTGCGTCGATTGCCTCGGTGAGTGGGCATGATTTGAATCTGACTCATTGGCGACGACGTCC
CTATCGTGCTCCGCATCATAGTGCTAGCGCAGTTGCACTGATCGGTGGTGGGGGACAGGCACGTCCGGGTGAGATTTCGC
TCGCGCATAATGGCGTGCTATTTATGGATGAATTGCCCGAATGGCAACGGAAAACCTTGGAAGCTTTACGTGAACCCATG
GAATCTGGTGTAGTGACGATTGCTCGTGCCACACGTAGTGTGGATTATCCTGCCCGTTTTCAGTTAGTGGCTGCTATGAA
TCCTTGCCCTTGTGGTTGGGCAGGTGATTCGAGTGGACGTTGTCAATGTGGTGTGGATGCAATTCGACGTTATCGTCGCC
GTATTTCTGGTCCTTTATTGGACCGCATTGATCTACAGTTGGAAATACCACGGTTGGCACCGCAGCTACTGCGTCCTAGT
ACACCGCGTGGTGAACATAGTGTTACAGTGCGGAGGCGTGTCACTGATGCCAGGACTTTGCAATATAATAGACAAGCGGG
GCTTAATGCGCATCTGGGCCAAGCCGCAACCGAGCGTCATTGCTGTTTGGATGTGATCGATCAGCAGTTGCTGGAACGCG
CGATCGAACAGTTGCAGCTATCGGCACGTTCAATGCAACGGATTCTACGCGTGGCACGCACGATTGCTGATTTGGATGGC
AGCACATTAATCACCAGCATGCATTTGCATGAAGCGATCGGGTATCGTCGATTCGACCGTACAGCCTTTGGCATTGCTTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PE49

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54

98.814

0.534
  comM Vibrio campbellii strain DS40M4

53.8

98.814

0.532
  comM Haemophilus influenzae Rd KW20

52.183

99.605

0.52
  comM Glaesserella parasuis strain SC1401

52.079

99.802

0.52
  comM Legionella pneumophila str. Paris

50

98.814

0.494
  comM Legionella pneumophila strain ERS1305867

50

98.814

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.495

100

0.443

Multiple sequence alignment