Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   DN94_07485 Genome accession   CP007565
Coordinates   1447743..1448528 (-) Length   261 a.a.
NCBI ID   AHX75489.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain 138spar     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1442743..1453528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN94_07465 - 1444500..1445330 (-) 831 AHX75485.1 phosphotransferase -
  DN94_07470 - 1445341..1445853 (-) 513 AHX75486.1 inosine-5-monophosphate dehydrogenase -
  DN94_07475 - 1446158..1447123 (+) 966 AHX75487.1 3-hydroxybutyryl-CoA dehydrogenase -
  DN94_07480 - 1447125..1447676 (-) 552 AHX75488.1 isochorismatase -
  DN94_07485 codY 1447743..1448528 (-) 786 AHX75489.1 transcriptional repressor CodY Regulator
  DN94_07490 - 1448654..1449865 (-) 1212 AHX75490.1 aminotransferase -
  DN94_07495 - 1450132..1450584 (+) 453 AHX75491.1 universal stress protein UspA -
  DN94_07500 - 1450640..1452022 (-) 1383 AHX75492.1 haloacid dehalogenase -
  DN94_07505 - 1452090..1453052 (+) 963 AHX75493.1 asparaginase -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 29020.17 Da        Isoelectric Point: 4.5011

>NTDB_id=20577 DN94_07485 AHX75489.1 1447743..1448528(-) (codY) [Streptococcus agalactiae strain 138spar]
MPNLLEKTRKITSILQRSVDSLDAELPYNTMAAQLADIIDCNACIINGGGNLLGYAMKYKTNTDRVEEFFETKQFPYYYV
KSASRVYDTEANLSVDNDLSIFPVETKENFQDGITTIAPIYGGGMRLGTFIIWRNDKEFSDDDLILVEIASTVVGIQLLN
LQTENLEENIRKQTAVTMAINTLSYSEMKAVAAILGELDGLEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFDKLKEYN

Nucleotide


Download         Length: 786 bp        

>NTDB_id=20577 DN94_07485 AHX75489.1 1447743..1448528(-) (codY) [Streptococcus agalactiae strain 138spar]
ATGCCGAATTTATTAGAAAAAACTAGAAAAATTACATCCATCTTACAGCGTTCCGTAGATAGCTTAGATGCCGAATTACC
ATATAATACAATGGCGGCTCAACTAGCTGATATTATTGACTGTAACGCATGTATTATTAATGGTGGTGGTAACTTACTTG
GCTATGCCATGAAATATAAAACAAACACTGACCGTGTGGAAGAATTTTTTGAAACAAAACAATTCCCATATTACTATGTT
AAATCTGCTAGTCGTGTCTATGATACAGAAGCTAACTTATCAGTAGATAATGATTTGTCAATTTTCCCAGTTGAGACAAA
GGAAAACTTCCAAGATGGTATTACAACAATCGCTCCAATTTATGGTGGTGGAATGCGCTTGGGAACATTTATTATCTGGC
GTAATGATAAAGAATTTAGCGACGATGATTTGATTTTAGTTGAAATTGCAAGCACCGTTGTTGGTATTCAATTACTTAAC
CTTCAAACAGAAAATCTAGAAGAAAATATTCGTAAACAAACAGCGGTGACGATGGCTATCAATACTCTATCTTATTCAGA
AATGAAAGCTGTAGCTGCTATCTTAGGAGAATTAGATGGACTTGAAGGACGCCTAACGGCATCTGTTATTGCAGACCGTA
TTGGAATTACACGTTCCGTTATTGTAAATGCTCTTCGTAAATTGGAGTCTGCGGGAATCATTGAGAGTCGCTCACTCGGT
ATGAAGGGAACATACCTCAAAGTTATTAACGAAGGTATTTTTGACAAATTAAAAGAATATAATTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(201-261)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

67.05

100

0.671
  codY Bacillus subtilis subsp. subtilis str. 168

51.822

94.636

0.49

Multiple sequence alignment