Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BRL64_RS08135 Genome accession   NZ_CP018100
Coordinates   1570953..1571732 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus safensis strain BRM1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1565953..1576732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BRL64_RS08115 (BRL64_07970) trmFO 1566657..1567961 (+) 1305 WP_024424183.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BRL64_RS08120 (BRL64_07975) xerC 1568024..1568941 (+) 918 WP_034281771.1 tyrosine recombinase XerC -
  BRL64_RS08125 (BRL64_07980) hslV 1568956..1569501 (+) 546 WP_034281773.1 ATP-dependent protease subunit HslV -
  BRL64_RS08130 (BRL64_07985) hslU 1569518..1570918 (+) 1401 WP_024424180.1 HslU--HslV peptidase ATPase subunit -
  BRL64_RS08135 (BRL64_07990) codY 1570953..1571732 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BRL64_RS08140 (BRL64_07995) flgB 1572021..1572410 (+) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  BRL64_RS08145 (BRL64_08000) flgC 1572410..1572862 (+) 453 WP_024424179.1 flagellar basal body rod protein FlgC -
  BRL64_RS08150 (BRL64_08005) fliE 1572874..1573191 (+) 318 WP_070325817.1 flagellar hook-basal body complex protein FliE -
  BRL64_RS08155 (BRL64_08010) fliF 1573241..1574833 (+) 1593 WP_024424177.1 flagellar basal-body MS-ring/collar protein FliF -
  BRL64_RS08160 (BRL64_08015) fliG 1574845..1575861 (+) 1017 WP_034281776.1 flagellar motor switch protein FliG -
  BRL64_RS08165 (BRL64_08020) fliH 1575854..1576618 (+) 765 WP_034281779.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=205762 BRL64_RS08135 WP_007499612.1 1570953..1571732(+) (codY) [Bacillus safensis strain BRM1]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=205762 BRL64_RS08135 WP_007499612.1 1570953..1571732(+) (codY) [Bacillus safensis strain BRM1]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTTAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGGGGAAAGCTTCTTGGCTACTCCATTA
ATCAGCAGATCGAAAATGCACGTATGAAAAAAATGCTTGAAGATCGTCAGTTCCCTGAGGAATATACAAAGAGTCTATTC
AATGTCCCTGAAACGTCTTCAAACCTTGATATTAACAGTGAATATACAGCTTTCCCGATTGAGAACCGTGACTTATTCCA
ATCAGGCTTAACAACAATTGTCCCAATTATCGGCGGAGGAGATCGTTTAGGTACGTTAATCCTGTCCCGCTTACAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGGGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCAGAG
GAAATCGAAGAAGAAGCAAGAAGCAAAGCGGTTGTCCAAATGGCGATTAGCTCTCTTTCATATAGTGAGCTTGAAGCGAT
TGAGCACATTTTTGAAGAGCTGGATGGAAACGAAGGTCTTCTTGTCGCAAGTAAAATTGCAGATCGTGTAGGGATTACGC
GTTCAGTGATCGTAAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTAATCGAATCTCGTTCTCTTGGAATGAAGGGAACG
TACATCAAAGTGTTAAACAACAAATTTTTAATTGAACTCGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment