Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   CLD04_RS06690 Genome accession   NZ_CP023257
Coordinates   1265668..1266585 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain TLO3     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1260668..1271585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLD04_RS06675 (CLD04_06675) trpS 1261248..1262240 (-) 993 WP_026113648.1 tryptophan--tRNA ligase -
  CLD04_RS06680 (CLD04_06680) oppA 1262984..1264621 (+) 1638 WP_003232957.1 oligopeptide ABC transporter substrate-binding protein OppA -
  CLD04_RS06685 (CLD04_06685) oppB 1264729..1265664 (+) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  CLD04_RS06690 (CLD04_06690) amiD 1265668..1266585 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  CLD04_RS06695 (CLD04_06695) oppD 1266590..1267666 (+) 1077 WP_015252358.1 oligopeptide ABC transporter ATP-binding protein OppD -
  CLD04_RS06700 (CLD04_06700) oppF 1267668..1268585 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  CLD04_RS06705 (CLD04_06705) yjbB 1268691..1269908 (+) 1218 WP_095843630.1 MFS transporter -
  CLD04_RS06710 (CLD04_06710) yjbC 1270072..1270650 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  CLD04_RS06715 (CLD04_06715) spx 1270831..1271226 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=205742 CLD04_RS06690 WP_003232954.1 1265668..1266585(+) (amiD) [Bacillus subtilis strain TLO3]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=205742 CLD04_RS06690 WP_003232954.1 1265668..1266585(+) (amiD) [Bacillus subtilis strain TLO3]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTCGCAGCCGCTGTTCTTGATTTGCTGATCGGTGTTATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAAGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364

Multiple sequence alignment