Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   BRW62_RS03875 Genome accession   NZ_CP018092
Coordinates   766020..767099 (+) Length   359 a.a.
NCBI ID   WP_227517559.1    Uniprot ID   -
Organism   Parathermosynechococcus lividus PCC 6715     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 761020..772099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BRW62_RS03850 (BRW62_03710) pyk 761129..762910 (+) 1782 WP_099798352.1 pyruvate kinase -
  BRW62_RS03855 (BRW62_03715) - 762920..763873 (+) 954 WP_099798353.1 serine hydrolase -
  BRW62_RS03860 (BRW62_03720) psaK 763850..764101 (-) 252 WP_099798354.1 photosystem I reaction center subunit PsaK -
  BRW62_RS03865 (BRW62_03725) - 764203..764874 (+) 672 WP_099798355.1 phosphoribosylanthranilate isomerase -
  BRW62_RS03870 (BRW62_03730) - 764839..765597 (-) 759 WP_099798356.1 DUF2993 domain-containing protein -
  BRW62_RS03875 (BRW62_03735) pilM 766020..767099 (+) 1080 WP_227517559.1 type IV pilus biogenesis protein PilM Machinery gene
  BRW62_RS03880 (BRW62_03740) - 767116..767814 (+) 699 WP_099798358.1 PilN domain-containing protein -
  BRW62_RS03885 (BRW62_03745) - 767811..768563 (+) 753 WP_099798359.1 pilus assembly protein PilO -
  BRW62_RS03890 (BRW62_03750) - 768659..770950 (+) 2292 WP_099798360.1 AMIN domain-containing protein -
  BRW62_RS03895 (BRW62_03755) - 771112..771345 (+) 234 WP_099798361.1 hypothetical protein -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 39041.92 Da        Isoelectric Point: 4.2290

>NTDB_id=205694 BRW62_RS03875 WP_227517559.1 766020..767099(+) (pilM) [Parathermosynechococcus lividus PCC 6715]
MFGNLFAKTKQGLGIELTPERVNIVQVQRQKQGLKASAIVSVPLSEGAIVEGRIIDTVAVADAIRQGIEDKRIKQKEVIS
AIPMNEAVIRLIRLPAELPDYELREVVLMQEAPLYLPFPREEADVDYQKLGSSLDEDGIERVEILLVGTPRDVTDAYITT
FSQAGLQLTALEVTSFALMRTLRDSLQQFVGEAAAIIDIGDEGTEISIVKDGIPQFNCKVPIGKDQMQEAISRAMNLPPS
MGVDLIENLTVPLEPMDVTGALNPSGAAILRVLTDLADEIRRSIDFYLNQGESLEVSQLLLAGPGASIGQIDEFFSQRLN
YSATVVDPISLLGLQTPEEIPLEKRPALGTVIGLSLRGA

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=205694 BRW62_RS03875 WP_227517559.1 766020..767099(+) (pilM) [Parathermosynechococcus lividus PCC 6715]
GTGTTTGGGAACTTATTTGCAAAAACAAAGCAAGGCTTGGGGATTGAACTCACCCCAGAGCGGGTCAATATTGTCCAAGT
CCAGCGGCAGAAGCAGGGTCTCAAGGCGAGTGCCATTGTCTCAGTTCCCCTCAGTGAAGGTGCCATCGTTGAAGGTCGAA
TTATTGACACCGTAGCGGTTGCCGATGCCATTCGCCAAGGGATTGAAGACAAGCGCATTAAACAAAAAGAGGTCATTAGT
GCTATCCCCATGAATGAGGCCGTCATTCGCCTGATTCGCTTGCCTGCGGAGCTACCCGACTATGAGCTACGGGAGGTGGT
GCTGATGCAGGAAGCTCCCCTTTACCTCCCCTTTCCGCGGGAAGAAGCGGATGTCGATTACCAAAAGCTCGGCAGTTCCC
TTGACGAAGATGGCATTGAGCGCGTAGAAATTTTGCTGGTGGGCACCCCCCGGGATGTCACTGATGCCTACATCACCACC
TTTTCCCAAGCAGGACTGCAACTCACCGCCCTTGAAGTCACCAGTTTTGCCCTCATGCGTACCCTCAGGGACTCACTGCA
ACAGTTTGTGGGTGAAGCCGCCGCAATTATCGATATTGGCGATGAAGGCACCGAAATTAGCATTGTCAAAGATGGCATCC
CCCAGTTCAATTGCAAAGTCCCGATTGGCAAGGATCAGATGCAGGAGGCCATCAGTCGTGCCATGAATTTGCCCCCCTCC
ATGGGGGTTGACCTCATCGAAAACTTGACAGTGCCCCTTGAACCCATGGATGTTACAGGTGCTCTCAACCCCAGTGGTGC
AGCCATCCTGCGAGTACTGACGGATTTAGCAGATGAAATTCGCCGCTCCATCGACTTTTACCTCAACCAAGGCGAAAGCC
TCGAAGTGTCGCAACTGCTGCTGGCCGGACCAGGCGCGAGCATTGGCCAAATCGATGAGTTCTTTAGCCAACGGCTCAAT
TATTCAGCCACCGTTGTGGATCCCATTTCCCTGTTAGGGTTGCAAACCCCAGAAGAGATCCCCTTAGAAAAACGTCCTGC
CCTTGGCACAGTCATTGGCTTGAGCCTACGCGGAGCCTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

49.311

100

0.499

Multiple sequence alignment