Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   Cj1343c Genome accession   NC_002163
Coordinates   1275935..1276450 (-) Length   171 a.a.
NCBI ID   YP_002344731.1    Uniprot ID   Q0P8R6
Organism   Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1270935..1281450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Cj1340c - 1271047..1272864 (-) 1818 YP_002344728.1 motility protein -
  Cj1341c - 1272861..1274684 (-) 1824 YP_002344729.1 hypothetical protein -
  Cj1342c - 1274694..1275935 (-) 1242 YP_002344730.1 hypothetical protein -
  Cj1343c ctsG 1275935..1276450 (-) 516 YP_002344731.1 periplasmic protein Machinery gene
  Cj1344c - 1276451..1277458 (-) 1008 YP_002344732.1 tRNA N6-adenosine threonylcarbamoyltransferase -
  Cj1345c - 1277455..1278849 (-) 1395 YP_002344733.1 periplasmic protein -
  Cj1346c dxr 1278851..1279921 (-) 1071 YP_002344734.1 1-deoxy-D-xylulose 5-phosphate reductoisomerase -
  Cj1347c cdsA 1279918..1280643 (-) 726 YP_002344735.1 phosphatidate cytidylyltransferase -
  Cj1348c - 1280652..1280990 (-) 339 YP_002344736.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18678.56 Da        Isoelectric Point: 6.4682

>NTDB_id=20567 Cj1343c YP_002344731.1 1275935..1276450(-) (ctsG) [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=20567 Cj1343c YP_002344731.1 1275935..1276450(-) (ctsG) [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8R6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.152

100

0.942

Multiple sequence alignment