Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | CLH63_RS17310 | Genome accession | NZ_CP023255 |
| Coordinates | 3549198..3549623 (+) | Length | 141 a.a. |
| NCBI ID | WP_003094721.1 | Uniprot ID | G3XD43 |
| Organism | Pseudomonas aeruginosa strain CCUG 70744 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3544198..3554623
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CLH63_RS17295 (CLH63_17295) | pilX | 3544762..3545349 (+) | 588 | WP_003112826.1 | type 4a pilus minor pilin PilX | - |
| CLH63_RS17300 (CLH63_17300) | pilY1 | 3545361..3548852 (+) | 3492 | WP_003123397.1 | type 4a pilus biogenesis protein PilY1 | - |
| CLH63_RS17305 (CLH63_17305) | pilY2 | 3548854..3549201 (+) | 348 | WP_003102609.1 | type 4a fimbrial biogenesis protein PilY2 | - |
| CLH63_RS17310 (CLH63_17310) | comF | 3549198..3549623 (+) | 426 | WP_003094721.1 | type 4a pilus minor pilin PilE | Machinery gene |
| CLH63_RS17315 (CLH63_17315) | ispH | 3549670..3550614 (-) | 945 | WP_003094724.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| CLH63_RS17320 (CLH63_17320) | fkpB | 3550700..3551140 (-) | 441 | WP_003161775.1 | FKBP-type peptidyl-prolyl cis-trans isomerase | - |
| CLH63_RS17325 (CLH63_17325) | lspA | 3551133..3551642 (-) | 510 | WP_003110420.1 | signal peptidase II | - |
| CLH63_RS17330 (CLH63_17330) | ileS | 3551635..3554466 (-) | 2832 | WP_110183977.1 | isoleucine--tRNA ligase | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 15279.30 Da Isoelectric Point: 10.0198
>NTDB_id=205642 CLH63_RS17310 WP_003094721.1 3549198..3549623(+) (comF) [Pseudomonas aeruginosa strain CCUG 70744]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR
Nucleotide
Download Length: 426 bp
>NTDB_id=205642 CLH63_RS17310 WP_003094721.1 3549198..3549623(+) (comF) [Pseudomonas aeruginosa strain CCUG 70744]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Acinetobacter baylyi ADP1 |
42.188 |
90.78 |
0.383 |