Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   DN94_03215 Genome accession   CP007565
Coordinates   590589..591374 (+) Length   261 a.a.
NCBI ID   AHX74730.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain 138spar     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 585589..596374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN94_03200 - 586706..588058 (+) 1353 AHX74727.1 hypothetical protein -
  DN94_03205 - 588155..588826 (+) 672 AHX74728.1 multidrug ABC transporter ATP-binding protein -
  DN94_03210 - 588883..590328 (-) 1446 AHX74729.1 hypothetical protein -
  DN94_03215 endA 590589..591374 (+) 786 AHX74730.1 DNA-entry nuclease Machinery gene
  DN94_03220 - 591452..592090 (-) 639 AHX74731.1 cytochrome O ubiquinol oxidase -
  DN94_03225 - 592307..592963 (+) 657 AHX74732.1 methionine ABC transporter ATP-binding protein -
  DN94_03230 - 592960..593733 (+) 774 AHX74733.1 membrane protein -
  DN94_03235 - 593897..594715 (+) 819 AHX74734.1 phosphate ABC transporter ATPase -
  DN94_03240 - 594752..595636 (-) 885 AHX74735.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 29465.87 Da        Isoelectric Point: 8.9989

>NTDB_id=20542 DN94_03215 AHX74730.1 590589..591374(+) (endA) [Streptococcus agalactiae strain 138spar]
MKRLHKLFITVIATLGMLGVMTFGLPTQPQNVTPIVHADVNSSVDTSQEFQNNLKNAIGNLPFQYVNGIYELNNNQTNLN
ADVNVKAYVQNTIDNQQRPSTANAMLDRTIRQYQNRRDTTLPDANWKPLGWHQVATNNHYGHAVDKGHLIAYALAGNFKG
WDASVSNPQNVVTQTAHSNQSNQKINRGQNYYESLVRKEVDQNKRVRYRVTPLYRNDTDLVPFAMHLEAKSQDGTLEFNV
AIPNTQASYTMDYATGEITLN

Nucleotide


Download         Length: 786 bp        

>NTDB_id=20542 DN94_03215 AHX74730.1 590589..591374(+) (endA) [Streptococcus agalactiae strain 138spar]
ATGAAAAGATTACATAAACTGTTTATAACCGTAATTGCTACATTAGGTATGTTGGGGGTAATGACCTTTGGTCTTCCAAC
GCAGCCGCAAAACGTAACACCGATAGTACATGCTGATGTCAATTCATCTGTTGATACGAGCCAGGAATTTCAAAATAATT
TAAAAAATGCTATTGGTAACCTACCATTTCAATATGTTAATGGTATTTATGAATTAAATAATAATCAAACAAATTTAAAT
GCTGATGTCAATGTTAAAGCGTATGTTCAAAATACAATTGACAATCAACAAAGACCATCAACTGCTAATGCAATGCTTGA
TAGAACCATTCGTCAATATCAAAATCGCAGAGATACCACTCTTCCCGATGCAAATTGGAAACCATTAGGTTGGCATCAAG
TAGCTACTAATAACCATTATGGGCATGCAGTCGACAAGGGGCATTTAATTGCCTATGCTTTAGCTGGAAATTTCAAAGGC
TGGGATGCTTCCGTGTCAAATCCTCAAAATGTTGTCACACAAACAGCTCATTCCAACCAATCAAATCAAAAAATCAATCG
TGGACAAAATTATTATGAAAGCTTAGTTCGTAAGGAGGTTGACCAAAACAAACGTGTTCGTTACCGTGTAACTCCATTGT
ACCGTAATGATACTGATTTAGTTCCATTTGCAATGCACCTAGAAGCTAAATCACAAGATGGCACATTAGAATTTAATGTT
GCTATTCCAAACACACAAGCATCATATACTATGGATTATGCAACAGGAGAAATAACACTAAATTAA

Domains

Predicted by InterProScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(77-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

51.515

75.862

0.391
  endA Streptococcus pneumoniae D39

51.515

75.862

0.391
  endA Streptococcus pneumoniae R6

51.515

75.862

0.391
  endA Streptococcus pneumoniae TIGR4

51.515

75.862

0.391