Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BI355_RS11625 Genome accession   NZ_CP017996
Coordinates   328433..328582 (+) Length   49 a.a.
NCBI ID   WP_198033232.1    Uniprot ID   -
Organism   Companilactobacillus crustorum strain MN047     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 323433..333582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BI355_RS01460 (BI355_0288) - 323561..324907 (-) 1347 WP_075887329.1 cytosine permease -
  BI355_RS01465 codA 325105..326337 (+) 1233 Protein_296 cytosine deaminase -
  BI355_RS01470 (BI355_0289) - 326404..327087 (+) 684 WP_057867692.1 GTP pyrophosphokinase -
  BI355_RS01475 (BI355_0290) - 327529..328071 (-) 543 WP_075887330.1 GNAT family N-acetyltransferase -
  BI355_RS11625 (BI355_0292) rcrQ 328433..328582 (+) 150 WP_198033232.1 hypothetical protein Regulator
  BI355_RS01480 (BI355_0293) - 328929..330578 (+) 1650 WP_075887331.1 alpha,alpha-phosphotrehalase -
  BI355_RS01485 (BI355_0294) - 330637..331368 (+) 732 WP_057867683.1 GntR family transcriptional regulator -
  BI355_RS01490 (BI355_0295) - 331433..332149 (-) 717 WP_075887332.1 GntR family transcriptional regulator -
  BI355_RS01495 (BI355_0296) - 332300..333376 (-) 1077 WP_075887333.1 GDSL-type esterase/lipase family protein -

Sequence

Protein


Download         Length: 49 a.a.        Molecular weight: 5740.50 Da        Isoelectric Point: 4.1520

>NTDB_id=204939 BI355_RS11625 WP_198033232.1 328433..328582(+) (rcrQ) [Companilactobacillus crustorum strain MN047]
MDYCFLLCKDSDLILVVKDGEIIERGTHTELMNENGFYANMYNSQFTKE

Nucleotide


Download         Length: 150 bp        

>NTDB_id=204939 BI355_RS11625 WP_198033232.1 328433..328582(+) (rcrQ) [Companilactobacillus crustorum strain MN047]
ATGGACTACTGCTTTCTACTATGTAAAGATTCGGATTTAATTTTGGTAGTTAAAGATGGCGAAATTATTGAACGAGGAAC
ACATACTGAATTAATGAACGAAAATGGTTTTTATGCAAACATGTATAACAGTCAGTTTACTAAAGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

65.854

83.673

0.551

Multiple sequence alignment