Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   PPYC2_RS13040 Genome accession   NZ_CP017968
Coordinates   2951926..2953776 (+) Length   616 a.a.
NCBI ID   WP_071558740.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain YC0573     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2946926..2958776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPYC2_RS13020 (PPYC2_13880) - 2947664..2948887 (+) 1224 WP_028541284.1 Ger(x)C family spore germination protein -
  PPYC2_RS13025 (PPYC2_13875) - 2948896..2949123 (+) 228 WP_226887813.1 hypothetical protein -
  PPYC2_RS13030 (PPYC2_13870) - 2949686..2950096 (+) 411 WP_028541283.1 MarR family winged helix-turn-helix transcriptional regulator -
  PPYC2_RS13035 (PPYC2_13865) rcrP 2950170..2951933 (+) 1764 WP_023988614.1 ABC transporter ATP-binding protein Regulator
  PPYC2_RS13040 (PPYC2_13860) rcrQ 2951926..2953776 (+) 1851 WP_071558740.1 ABC transporter ATP-binding protein Regulator
  PPYC2_RS13045 (PPYC2_13855) - 2953897..2954205 (+) 309 WP_025723019.1 hypothetical protein -
  PPYC2_RS27665 - 2954550..2954903 (+) 354 WP_053325447.1 hypothetical protein -
  PPYC2_RS13060 (PPYC2_13845) - 2955149..2955568 (+) 420 WP_071558739.1 ester cyclase -
  PPYC2_RS13065 (PPYC2_13840) - 2955793..2957184 (-) 1392 WP_071558738.1 PLP-dependent aminotransferase family protein -
  PPYC2_RS13070 (PPYC2_13835) - 2957292..2958023 (+) 732 WP_071558737.1 AzlC family ABC transporter permease -
  PPYC2_RS13075 (PPYC2_13830) - 2958004..2958336 (+) 333 WP_071558736.1 branched-chain amino acid transporter permease -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 67841.40 Da        Isoelectric Point: 6.1585

>NTDB_id=204573 PPYC2_RS13040 WP_071558740.1 2951926..2953776(+) (rcrQ) [Paenibacillus polymyxa strain YC0573]
MDKNEHTVDSQQMKMNQGGPMGKGPAGGKGAGEKANNFKKTIRQLISYSKAYVPMIILAMVLALVGSTLNVIGPDKLSDI
ANLIQEGIVTGIDVSAVQKIVLVLALLYGFGLIFNYFQGFITATVSQRLTKKMRTELSQKIDHMPLKYFDSTSYGNVLSR
VTNDVDTIGQTLNNSLGTLVGALATFVGALIMMLYTNWIMTVTGIVATLIGFCLMSVIMKHSQKYFVAQQAELGQINGHI
EETYAGHNVVKVYNGEQAAKEVFHGINSRLYTNAWKSQFMSGLMMPVMMFIGNFGYVAVCVVGALLVNQQTITIGTIVAF
MVYIRLFTQPLSQLAQAATNLQSAAAASERVFEFLGEEELADERHKTIKLDTAKGDVEFKHVRFGYNTDRMIIKDFSMKA
EAGQKIAIVGPTGAGKTTLVNLLMRFYELNDGEIYIDGTPISQLTRENIHELFCMVLQDTWLFEGTIRDNIVFSKDHVTD
EQVEAASRAVGLHSFIKTLPQGYDTVLDDKANLSAGQKQLITIARAMIEDSPMLILDEATSSVDTRTELLIQQAMDQLTV
GKTSFVIAHRLSTIKNADLILVMKDGDIIEMGNHEELLAKGGFYADLYNSQFEHAS

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=204573 PPYC2_RS13040 WP_071558740.1 2951926..2953776(+) (rcrQ) [Paenibacillus polymyxa strain YC0573]
ATGGATAAGAATGAACACACCGTCGACAGCCAGCAAATGAAAATGAATCAGGGAGGTCCCATGGGTAAAGGCCCTGCGGG
GGGCAAGGGTGCTGGTGAAAAAGCGAATAATTTTAAAAAGACCATCAGACAGCTTATATCCTACAGCAAGGCCTATGTGC
CTATGATTATACTAGCTATGGTACTGGCCTTGGTCGGCTCCACCCTCAACGTGATTGGCCCGGATAAGCTCAGTGATATT
GCCAACCTGATTCAGGAAGGAATCGTAACCGGGATTGATGTAAGTGCTGTTCAGAAGATTGTTCTTGTATTGGCGCTTTT
ATATGGATTTGGTCTTATCTTTAACTATTTCCAGGGCTTCATTACGGCAACCGTCTCACAGCGTCTTACAAAGAAGATGC
GGACAGAGCTGTCTCAAAAAATCGATCATATGCCTTTGAAGTATTTTGACTCTACGAGTTACGGTAATGTGCTTAGCCGC
GTAACCAACGATGTCGATACCATCGGACAAACGTTAAACAACAGTCTCGGCACGCTTGTCGGTGCACTGGCTACCTTTGT
GGGCGCCTTGATTATGATGCTTTATACAAACTGGATCATGACCGTTACCGGAATTGTAGCTACGCTGATCGGCTTTTGCC
TGATGAGCGTGATTATGAAGCATTCACAGAAATACTTTGTAGCACAGCAAGCGGAGCTTGGCCAGATCAACGGTCATATC
GAAGAAACCTATGCTGGTCATAACGTAGTCAAGGTATATAACGGGGAACAAGCAGCCAAGGAAGTGTTTCATGGCATTAA
CAGCCGCCTATATACAAATGCATGGAAGTCCCAGTTCATGTCTGGTCTGATGATGCCAGTCATGATGTTCATTGGAAATT
TTGGTTATGTCGCGGTTTGTGTCGTGGGAGCTTTGCTGGTCAACCAACAGACTATAACTATCGGAACTATTGTCGCCTTC
ATGGTGTATATTCGTCTGTTTACACAGCCCTTGTCGCAGCTGGCACAGGCCGCAACCAATCTGCAGTCGGCGGCTGCCGC
CAGTGAACGTGTATTCGAATTTCTGGGTGAAGAAGAATTGGCAGATGAGCGTCACAAGACCATAAAGCTGGACACCGCCA
AAGGGGATGTCGAATTCAAACATGTCCGTTTCGGCTATAATACAGACCGTATGATTATCAAGGACTTCTCCATGAAAGCT
GAAGCTGGTCAGAAAATTGCCATTGTCGGTCCGACAGGCGCCGGTAAGACCACGCTCGTGAATTTGCTCATGCGGTTTTA
TGAGCTGAACGATGGAGAAATCTACATTGACGGAACCCCGATTAGTCAATTAACGCGTGAGAATATTCATGAATTATTCT
GTATGGTGCTTCAGGATACCTGGCTGTTCGAAGGAACGATTCGTGACAATATCGTCTTTTCCAAAGATCATGTTACCGAT
GAGCAGGTGGAAGCTGCTAGTAGAGCGGTGGGGCTGCACAGCTTCATTAAAACACTGCCGCAGGGCTATGATACAGTGCT
GGACGACAAAGCCAATCTCTCCGCCGGTCAAAAGCAATTGATTACCATTGCAAGAGCGATGATTGAAGATTCACCCATGC
TCATTCTGGATGAGGCCACAAGCTCGGTTGATACGCGTACGGAATTGCTGATTCAACAAGCGATGGACCAGCTGACTGTG
GGGAAAACCTCCTTTGTGATTGCTCACCGACTTTCGACGATCAAGAATGCGGATCTGATTCTGGTCATGAAGGATGGTGA
CATTATCGAAATGGGTAACCATGAGGAATTGCTGGCTAAAGGCGGCTTCTATGCTGATCTATACAACAGTCAGTTTGAAC
ATGCATCCTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(394-541)

ABC transporter transmembrane region (ABC_membrane)

(57-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.326

93.669

0.528

Multiple sequence alignment