Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BMU11_RS03085 Genome accession   NZ_CP017938
Coordinates   636560..637147 (-) Length   195 a.a.
NCBI ID   WP_005066890.1    Uniprot ID   -
Organism   Acinetobacter pittii strain YMC2010/8/T346     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 631560..642147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMU11_RS03060 (BMU11_02955) - 631574..633073 (+) 1500 WP_017399625.1 PLP-dependent aminotransferase family protein -
  BMU11_RS03065 (BMU11_02960) - 633139..634581 (-) 1443 WP_078219835.1 amino acid permease -
  BMU11_RS03070 (BMU11_02965) ydcN 634887..635435 (-) 549 WP_078219836.1 helix-turn-helix domain-containing protein -
  BMU11_RS03075 (BMU11_02970) - 635504..636199 (+) 696 WP_005804464.1 AzlC family ABC transporter permease -
  BMU11_RS03080 (BMU11_02975) - 636196..636519 (+) 324 WP_078219837.1 AzlD domain-containing protein -
  BMU11_RS03085 (BMU11_02980) ssb 636560..637147 (-) 588 WP_005066890.1 single-stranded DNA-binding protein Machinery gene
  BMU11_RS03090 (BMU11_02985) yajR 637199..638563 (-) 1365 WP_032036088.1 MFS transporter -
  BMU11_RS03095 (BMU11_02990) - 638710..639792 (-) 1083 WP_005066886.1 DUF475 domain-containing protein -
  BMU11_RS03100 (BMU11_02995) tenA 640055..640729 (+) 675 WP_078219838.1 thiaminase II -
  BMU11_RS03105 (BMU11_03000) - 640795..641166 (+) 372 WP_078219839.1 MerR family transcriptional regulator -
  BMU11_RS03110 (BMU11_03005) - 641270..642076 (+) 807 WP_078219840.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21223.01 Da        Isoelectric Point: 6.4822

>NTDB_id=204264 BMU11_RS03085 WP_005066890.1 636560..637147(-) (ssb) [Acinetobacter pittii strain YMC2010/8/T346]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNSGGYGNQG
GFGNGGSNPQAGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=204264 BMU11_RS03085 WP_005066890.1 636560..637147(-) (ssb) [Acinetobacter pittii strain YMC2010/8/T346]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCAATCGCGACAAGTGAAGCTTGGACTGATAAAAATACTGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCTTGCGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCACTACGTACACGTCAGTGGACAGACCAAAATGGCCAAGAGCGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGCGGTAATGATTTTAACCAACCACGTTTTAACGCACCTCAAC
AAGGTGGTAATGGTTATCAAAATAATAACAACCAAGGTGGCGGCTATGGCCAAAACAGTGGTGGTTATGGTAACCAAGGT
GGTTTTGGTAATGGTGGAAGCAACCCTCAAGCGGGTGGTTTTGCGCCTAAAGCTCCGCAACAACCAGCTTCTGCACCAGC
TGATTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.475

100

0.544
  ssb Vibrio cholerae strain A1552

44.5

100

0.456
  ssb Neisseria meningitidis MC58

39.394

100

0.4
  ssb Neisseria gonorrhoeae MS11

37.879

100

0.385

Multiple sequence alignment