Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   K09K1_RS16095 Genome accession   NZ_CP017919
Coordinates   1569674..1570399 (+) Length   241 a.a.
NCBI ID   WP_054729114.1    Uniprot ID   A0A1W6TMM7
Organism   Vibrio alginolyticus strain K09K1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1564674..1575399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K09K1_RS16080 (K09K1_31920) - 1565807..1568128 (+) 2322 WP_025768309.1 Tex family protein -
  K09K1_RS16085 (K09K1_31930) - 1568233..1568697 (-) 465 WP_005379316.1 hypothetical protein -
  K09K1_RS16090 (K09K1_31940) bioH 1568822..1569589 (-) 768 WP_005384724.1 pimeloyl-ACP methyl ester esterase BioH -
  K09K1_RS16095 (K09K1_31950) comF 1569674..1570399 (+) 726 WP_054729114.1 amidophosphoribosyltransferase Machinery gene
  K09K1_RS16100 (K09K1_31960) nfuA 1570497..1571081 (+) 585 WP_005379313.1 Fe-S biogenesis protein NfuA -
  K09K1_RS16105 (K09K1_31970) nudE 1571258..1571827 (+) 570 WP_005379309.1 ADP compounds hydrolase NudE -
  K09K1_RS16110 (K09K1_31980) cysQ 1571872..1572699 (+) 828 WP_005379308.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  K09K1_RS16115 (K09K1_31990) - 1572992..1573753 (-) 762 WP_086046433.1 type II secretion system protein N -
  K09K1_RS16120 (K09K1_32000) - 1573755..1574246 (-) 492 WP_005383002.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27795.07 Da        Isoelectric Point: 9.7558

>NTDB_id=204100 K09K1_RS16095 WP_054729114.1 1569674..1570399(+) (comF) [Vibrio alginolyticus strain K09K1]
MLSHHWQNIMHRVLSSQCGLCRFPIQTPSHTNTLRWCEHCLKYLTPVKRCQRCGLSLQKEEMSTDSICGECLSKPPPWQR
LYTLGDYDFPLSREVQRFKDHGESWHVKALTEQLAQRITTPAPIITSVPLHWQRYLRRGFNQSDVLARHLAKQLQTNFDA
KVFRRVKLAQSQRGNTKTSREQNLKGAFILNKRPHSSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPRS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=204100 K09K1_RS16095 WP_054729114.1 1569674..1570399(+) (comF) [Vibrio alginolyticus strain K09K1]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGCGTATTGAGCAGTCAATGCGGCCTGTGTCGGTTCCCTATTCAAAC
ACCAAGCCACACAAATACTCTGCGCTGGTGCGAGCACTGTTTAAAATACCTAACTCCGGTAAAACGATGTCAACGCTGCG
GTTTATCATTACAGAAAGAAGAAATGAGTACGGATAGTATTTGTGGTGAATGTCTTTCAAAGCCACCGCCATGGCAAAGG
CTATACACGTTAGGCGATTACGACTTTCCCCTTTCACGGGAAGTACAACGCTTTAAAGATCACGGAGAGTCTTGGCATGT
AAAAGCATTAACCGAGCAACTGGCACAGCGCATCACCACGCCAGCTCCAATCATTACCAGTGTGCCATTGCACTGGCAGC
GTTACCTGCGCCGGGGTTTTAATCAAAGTGATGTTTTAGCCCGACACCTCGCCAAGCAATTGCAGACTAATTTTGATGCG
AAGGTCTTTCGTCGAGTAAAGCTCGCCCAATCACAGCGTGGTAATACCAAAACAAGCCGTGAACAAAACTTAAAAGGCGC
GTTTATTCTCAATAAGCGCCCTCACTCTTCCCATGTTGCCATCGTCGATGATGTAGTCACCACAGGCAGTACCGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTCGTTCT
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W6TMM7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

71.369

100

0.714
  comF Vibrio cholerae strain A1552

47.5

99.585

0.473

Multiple sequence alignment