Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   K04M5_RS00690 Genome accession   NZ_CP017899
Coordinates   142952..143677 (-) Length   241 a.a.
NCBI ID   WP_054729114.1    Uniprot ID   A0A1W6TMM7
Organism   Vibrio alginolyticus strain K04M5     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 137952..148677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K04M5_RS00665 (K04M5_01280) - 139105..139596 (+) 492 WP_005383002.1 type II secretion system protein M -
  K04M5_RS00670 (K04M5_01290) - 139598..140359 (+) 762 WP_086046433.1 type II secretion system protein N -
  K04M5_RS00675 (K04M5_01300) cysQ 140652..141479 (-) 828 WP_005379308.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  K04M5_RS00680 (K04M5_01310) nudE 141524..142093 (-) 570 WP_005379309.1 ADP compounds hydrolase NudE -
  K04M5_RS00685 (K04M5_01320) nfuA 142270..142854 (-) 585 WP_005379313.1 Fe-S biogenesis protein NfuA -
  K04M5_RS00690 (K04M5_01330) comF 142952..143677 (-) 726 WP_054729114.1 amidophosphoribosyltransferase Machinery gene
  K04M5_RS00695 (K04M5_01340) bioH 143762..144529 (+) 768 WP_005384724.1 pimeloyl-ACP methyl ester esterase BioH -
  K04M5_RS00700 (K04M5_01350) - 144654..145118 (+) 465 WP_005379316.1 hypothetical protein -
  K04M5_RS00705 (K04M5_01360) - 145223..147544 (-) 2322 WP_025768309.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27795.07 Da        Isoelectric Point: 9.7558

>NTDB_id=203788 K04M5_RS00690 WP_054729114.1 142952..143677(-) (comF) [Vibrio alginolyticus strain K04M5]
MLSHHWQNIMHRVLSSQCGLCRFPIQTPSHTNTLRWCEHCLKYLTPVKRCQRCGLSLQKEEMSTDSICGECLSKPPPWQR
LYTLGDYDFPLSREVQRFKDHGESWHVKALTEQLAQRITTPAPIITSVPLHWQRYLRRGFNQSDVLARHLAKQLQTNFDA
KVFRRVKLAQSQRGNTKTSREQNLKGAFILNKRPHSSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPRS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=203788 K04M5_RS00690 WP_054729114.1 142952..143677(-) (comF) [Vibrio alginolyticus strain K04M5]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGCGTATTGAGCAGTCAATGCGGCCTGTGTCGGTTCCCTATTCAAAC
ACCAAGCCACACAAATACTCTGCGCTGGTGCGAGCACTGTTTAAAATACCTAACTCCGGTAAAACGATGTCAACGCTGCG
GTTTATCATTACAGAAAGAAGAAATGAGTACGGATAGTATTTGTGGTGAATGTCTTTCAAAGCCACCGCCATGGCAAAGG
CTATACACGTTAGGCGATTACGACTTTCCCCTTTCACGGGAAGTACAACGCTTTAAAGATCACGGAGAGTCTTGGCATGT
AAAAGCATTAACCGAGCAACTGGCACAGCGCATCACCACGCCAGCTCCAATCATTACCAGTGTGCCATTGCACTGGCAGC
GTTACCTGCGCCGGGGTTTTAATCAAAGTGATGTTTTAGCCCGACACCTCGCCAAGCAATTGCAGACTAATTTTGATGCG
AAGGTCTTTCGTCGAGTAAAGCTCGCCCAATCACAGCGTGGTAATACCAAAACAAGCCGTGAACAAAACTTAAAAGGCGC
GTTTATTCTCAATAAGCGCCCTCACTCTTCCCATGTTGCCATCGTCGATGATGTAGTCACCACAGGCAGTACCGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTCGTTCT
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W6TMM7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

71.369

100

0.714
  comF Vibrio cholerae strain A1552

47.5

99.585

0.473

Multiple sequence alignment