Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   DN94_04125 Genome accession   CP007565
Coordinates   775931..776788 (+) Length   285 a.a.
NCBI ID   AHX74898.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain 138spar     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 770931..781788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN94_04095 - 771244..772125 (+) 882 AHX74892.1 ATP synthase F0F1 subunit gamma -
  DN94_04100 - 772199..773605 (+) 1407 AHX74893.1 ATP synthase subunit beta -
  DN94_04105 - 773618..774034 (+) 417 AHX74894.1 ATP synthase F0F1 subunit epsilon -
  DN94_04110 - 774099..774329 (+) 231 AHX74895.1 membrane protein -
  DN94_04115 - 774392..775663 (+) 1272 AHX74896.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DN94_04120 - 775665..775856 (+) 192 AHX74897.1 DNA-directed RNA polymerase subunit beta -
  DN94_04125 endA 775931..776788 (+) 858 AHX74898.1 DNA-entry nuclease Machinery gene
  DN94_04130 pheS 777079..778119 (+) 1041 AHX74899.1 phenylalanine--tRNA ligase -
  DN94_04140 - 778776..781181 (+) 2406 AHX74900.1 phenylalanyl-tRNA synthase subunit beta -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 31486.49 Da        Isoelectric Point: 10.3651

>NTDB_id=20305 DN94_04125 AHX74898.1 775931..776788(+) (endA) [Streptococcus agalactiae strain 138spar]
MTKKQKQITASIVTLLFSLLAIGLGESKSLPNDHILKQVTDLIISNESGKNTSLKNVSGTPSRELSESVLTSNVKKQLGT
NIAWNQSGAFIINQNKTDLNAKVTSAPYAINEIKKVNNQIVPTKANALLTKATRQYRNREETGNGRTYWKPAGWHQINGL
KGSYNHDVDRGHLICYALVGSLRGFDASTSNPKNIATQTAWANQANSNQSTGQNYYETLVRKALDRHKTVRYRVTLIYDR
DNLLSSGSHIEAKSSDGSLEFNVFIPNVQSGLLFDYATGKVKQTK

Nucleotide


Download         Length: 858 bp        

>NTDB_id=20305 DN94_04125 AHX74898.1 775931..776788(+) (endA) [Streptococcus agalactiae strain 138spar]
ATGACAAAAAAACAAAAACAAATAACAGCTTCGATTGTAACTTTGCTTTTTTCATTACTGGCAATAGGGTTAGGTGAAAG
CAAATCTTTGCCTAATGATCACATTTTAAAACAGGTGACAGATTTAATTATTAGTAATGAATCTGGCAAAAATACTTCCC
TTAAAAATGTATCAGGAACTCCTAGTAGAGAGTTATCTGAATCTGTTTTGACTAGCAATGTTAAAAAACAATTGGGAACA
AATATAGCTTGGAACCAGTCAGGTGCTTTTATCATTAATCAAAATAAAACAGATTTGAATGCTAAAGTGACAAGTGCACC
ATATGCTATTAATGAAATAAAGAAGGTTAATAACCAAATTGTTCCGACTAAAGCAAATGCCTTATTAACAAAAGCAACTC
GTCAATATCGAAATCGAGAAGAAACAGGGAATGGTAGAACTTATTGGAAACCAGCTGGATGGCATCAGATAAATGGATTA
AAAGGGAGCTATAACCATGATGTGGACAGAGGCCATTTAATTTGTTATGCTTTAGTAGGGAGTTTAAGAGGATTTGATGC
CTCCACAAGTAATCCTAAAAATATTGCCACACAAACAGCTTGGGCAAACCAAGCTAATAGCAACCAATCAACAGGGCAAA
ATTATTATGAAACTTTAGTTCGTAAAGCATTGGATCGTCATAAAACTGTTAGGTATCGTGTGACTTTAATTTATGACAGA
GATAATCTTTTATCTTCGGGATCACATATTGAGGCTAAATCTTCAGATGGAAGTTTAGAATTTAACGTTTTTATTCCTAA
TGTACAATCGGGATTATTATTTGATTATGCAACAGGAAAAGTGAAGCAGACAAAGTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(87-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

65.517

81.404

0.533
  endA Streptococcus pneumoniae D39

65.517

81.404

0.533
  endA Streptococcus pneumoniae R6

65.517

81.404

0.533
  endA Streptococcus pneumoniae TIGR4

65.517

81.404

0.533

Multiple sequence alignment