Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   CJZ71_RS20835 Genome accession   NZ_CP022891
Coordinates   3924626..3925075 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain DKU_NT_03     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 3919626..3930075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJZ71_RS20795 (CJZ71_20795) ctaE 3919643..3920266 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  CJZ71_RS20800 (CJZ71_20800) ctaF 3920269..3920601 (+) 333 WP_014479710.1 cytochrome c oxidase subunit IVB -
  CJZ71_RS20805 (CJZ71_20805) ctaG 3920629..3921522 (+) 894 WP_014479711.1 cytochrome c oxidase assembly factor CtaG -
  CJZ71_RS20810 (CJZ71_20810) ylbA 3921554..3921916 (-) 363 WP_003232238.1 YugN family protein -
  CJZ71_RS20815 (CJZ71_20815) ylbB 3922056..3922502 (+) 447 WP_046160383.1 CBS domain-containing protein -
  CJZ71_RS20820 (CJZ71_20820) ylbC 3922586..3923626 (+) 1041 WP_041850862.1 CAP domain-containing protein -
  CJZ71_RS20825 (CJZ71_20825) ylbD 3923857..3924255 (+) 399 WP_046160384.1 YlbD family protein -
  CJZ71_RS20830 (CJZ71_20830) ylbE 3924271..3924510 (+) 240 WP_003232231.1 YlbE-like family protein -
  CJZ71_RS20835 (CJZ71_20835) ylbF 3924626..3925075 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  CJZ71_RS20840 (CJZ71_20840) ylbG 3925130..3925402 (+) 273 WP_009967171.1 YlbG family protein -
  CJZ71_RS20845 (CJZ71_20845) rsmD 3925725..3926279 (+) 555 WP_033881642.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  CJZ71_RS20850 (CJZ71_20850) coaD 3926284..3926769 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  CJZ71_RS20855 (CJZ71_20855) spoVV 3926780..3928006 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  CJZ71_RS20860 (CJZ71_20860) ylbK 3928187..3928969 (+) 783 WP_003232221.1 patatin family protein -
  CJZ71_RS20865 (CJZ71_20865) sepM 3928971..3929996 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=203049 CJZ71_RS20835 WP_003221370.1 3924626..3925075(+) (ylbF) [Bacillus subtilis strain DKU_NT_03]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=203049 CJZ71_RS20835 WP_003221370.1 3924626..3925075(+) (ylbF) [Bacillus subtilis strain DKU_NT_03]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1