Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   CJZ71_RS18785 Genome accession   NZ_CP022891
Coordinates   3550457..3551374 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain DKU_NT_03     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3545457..3556374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJZ71_RS18770 (CJZ71_18770) trpS 3546037..3547029 (-) 993 WP_003245134.1 tryptophan--tRNA ligase -
  CJZ71_RS18775 (CJZ71_18775) oppA 3547773..3549410 (+) 1638 WP_014479443.1 oligopeptide ABC transporter substrate-binding protein OppA -
  CJZ71_RS18780 (CJZ71_18780) oppB 3549518..3550453 (+) 936 WP_014479444.1 oligopeptide ABC transporter permease OppB -
  CJZ71_RS18785 (CJZ71_18785) amiD 3550457..3551374 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  CJZ71_RS18790 (CJZ71_18790) oppD 3551379..3552455 (+) 1077 WP_077670618.1 oligopeptide ABC transporter ATP-binding protein OppD -
  CJZ71_RS18795 (CJZ71_18795) oppF 3552457..3553374 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  CJZ71_RS18800 (CJZ71_18800) yjbB 3553482..3554699 (+) 1218 WP_072592593.1 MFS transporter -
  CJZ71_RS18805 (CJZ71_18805) yjbC 3554863..3555441 (+) 579 Protein_3648 GNAT family N-acetyltransferase -
  CJZ71_RS18810 (CJZ71_18810) spx 3555622..3556017 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=203033 CJZ71_RS18785 WP_003232954.1 3550457..3551374(+) (amiD) [Bacillus subtilis strain DKU_NT_03]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=203033 CJZ71_RS18785 WP_003232954.1 3550457..3551374(+) (amiD) [Bacillus subtilis strain DKU_NT_03]
ATGCAGAACATTCCGAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTGCTCATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCCCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGGCGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTGTTCTTGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACGGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTTACAGAAGCC
TTTTTAAGCTATTTGGGACTCGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCTGGATTTATCTGCATTACAATGTTTGGCTTTAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364

Multiple sequence alignment