Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BK049_RS00500 Genome accession   NZ_CP017786
Coordinates   107086..107865 (-) Length   259 a.a.
NCBI ID   WP_008354497.1    Uniprot ID   A0AAC9IF08
Organism   Bacillus xiamenensis strain VV3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 102086..112865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BK049_RS00470 (BK049_00470) fliH 102200..102964 (-) 765 WP_071167622.1 flagellar assembly protein FliH -
  BK049_RS00475 (BK049_00475) fliG 102957..103973 (-) 1017 WP_008354492.1 flagellar motor switch protein FliG -
  BK049_RS00480 (BK049_00480) fliF 103985..105577 (-) 1593 WP_008354493.1 flagellar basal-body MS-ring/collar protein FliF -
  BK049_RS00485 (BK049_00485) fliE 105628..105945 (-) 318 WP_008354494.1 flagellar hook-basal body complex protein FliE -
  BK049_RS00490 (BK049_00490) flgC 105957..106409 (-) 453 WP_008354495.1 flagellar basal body rod protein FlgC -
  BK049_RS00495 (BK049_00495) flgB 106409..106798 (-) 390 WP_008354496.1 flagellar basal body rod protein FlgB -
  BK049_RS00500 (BK049_00500) codY 107086..107865 (-) 780 WP_008354497.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BK049_RS00505 (BK049_00505) hslU 107900..109300 (-) 1401 WP_008354498.1 HslU--HslV peptidase ATPase subunit -
  BK049_RS00510 (BK049_00510) hslV 109317..109862 (-) 546 WP_008354499.1 ATP-dependent protease subunit HslV -
  BK049_RS00515 (BK049_00515) xerC 109877..110794 (-) 918 WP_071167623.1 tyrosine recombinase XerC -
  BK049_RS00520 (BK049_00520) trmFO 110857..112161 (-) 1305 WP_008354501.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29031.28 Da        Isoelectric Point: 4.7176

>NTDB_id=202888 BK049_RS00500 WP_008354497.1 107086..107865(-) (codY) [Bacillus xiamenensis strain VV3]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDRFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=202888 BK049_RS00500 WP_008354497.1 107086..107865(-) (codY) [Bacillus xiamenensis strain VV3]
ATGGCGTTATTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTTAAAGAAAT
GGCAGAAACACTTAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTATTCCATCA
ACCAGCAGATCGAAAATGCACGTATGAAAAAAATGCTTGAAGACCGTCAGTTCCCTGAAGAATATACAAAAAGTCTATTC
AATGTCCCTGAAACGTCTTCAAACCTTGACATCAACAGTGAGTATACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACAATTGTTCCAATCATCGGAGGCGGAGATCGCTTAGGGACGTTAATCTTGTCTCGTTTGCAAGATA
GATTTACAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCAGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTCCAAATGGCGATCAGTTCTCTTTCCTATAGTGAGCTTGAAGCAAT
TGAGCACATCTTCGAAGAACTTGATGGAAACGAAGGACTGCTTGTGGCAAGTAAAATTGCTGACCGTGTAGGCATCACTC
GTTCAGTCATCGTAAACGCCTTGCGTAAGTTAGAAAGTGCAGGCGTAATTGAATCTCGTTCTCTTGGAATGAAGGGCACG
TACATCAAAGTGTTAAACAATAAATTTTTAATCGAACTTGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment