Detailed information NTG0202878

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: CJZ70_RS15200
• Genome accession: NZ_CP022890
• Coordinates: 2878633..2879805 (-)
• Length: 390 a.a.
• NCBI ID: WP_095010714.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain DKU_NT_02
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2873633..2884805

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CJZ70_RS15180 (CJZ70_15180)	yhcQ	2875558..2876177 (+)	620	Protein_3020	spore coat protein	-
CJZ70_RS15190 (CJZ70_15190)	yhcN	2877198..2877773 (-)	576	WP_038829230.1	YhcN/YlaJ family sporulation lipoprotein	-
CJZ70_RS15195 (CJZ70_15195)	-	2877923..2878369 (+)	447	WP_014479275.1	hypothetical protein	-
CJZ70_RS15200 (CJZ70_15200)	rapF	2878633..2879805 (-)	1173	WP_095010714.1	Rap family tetratricopeptide repeat protein	Regulator
CJZ70_RS15205 (CJZ70_15205)	-	2880166..2881413 (+)	1248	WP_031600262.1	IS256-like element ISBsu2 family transposase	-
CJZ70_RS15210 (CJZ70_15210)	-	2881474..2882262 (-)	789	WP_095010715.1	DUF4145 domain-containing protein	-
CJZ70_RS15215 (CJZ70_15215)	-	2882360..2882743 (-)	384	WP_033881966.1	cystatin-like fold lipoprotein	-
CJZ70_RS15220 (CJZ70_15220)	-	2882806..2883312 (-)	507	WP_043857175.1	hypothetical protein	-
CJZ70_RS15225 (CJZ70_15225)	cwlT	2883327..2884316 (-)	990	WP_043857174.1	bifunctional lytic transglycosylase/C40 family peptidase	-

Sequence

Protein

• Length: 390 a.a.
• Molecular weight: 46133.52 Da
• Isoelectric Point: 5.5408

>NTDB_id=202878 CJZ70_RS15200 WP_095010714.1 2878633..2879805(-) (rapF) [Bacillus subtilis strain DKU_NT_02]
MRGVLDKDKIPYDVVTKKLNEWYTHIKNDDLEKAKQIKKEVEEDLKKMEESKDALLYYQLLEFRHELLVNYMNSEKTEEL
KSSYLAMKKLEDQGNVTGMLEYYFHFFMGMYEFRRKKLTAAITSYRKAEAKLSEVDDEIEKAEFFFKVSYVYYYMKQTYF
SLNYAYRALEIYQRYDDYFIQRLRCQFVLGGNFIDSLEYEKALDTFMEALKIAEEIKIDYLIGMAHINIGICFDELKDYK
SASSHLKKALDLLEVSDHSFVAKTLFILTHVKIKQGDKESAGDYFQKGHEFVNKTNDAEYNAKFKILEGLYFSNGEYELI
SEAFAYFDSMKMYADLENYAVEVAQFFHRKQDFQRSSEYYMMSVEARNKIKKGEIINETQSGHIGSSGVN

Nucleotide

• Length: 1173 bp

>NTDB_id=202878 CJZ70_RS15200 WP_095010714.1 2878633..2879805(-) (rapF) [Bacillus subtilis strain DKU_NT_02]
TTGCGAGGTGTTTTAGATAAAGATAAAATTCCATATGATGTAGTTACAAAAAAATTAAACGAATGGTACACCCATATAAA
AAATGATGATCTTGAAAAAGCTAAACAAATAAAAAAAGAAGTTGAAGAAGATCTAAAAAAAATGGAAGAAAGTAAAGATG
CTTTACTATATTATCAATTGCTTGAATTCCGCCACGAGTTATTGGTCAATTACATGAATTCAGAAAAGACAGAAGAATTG
AAAAGTTCATATCTGGCTATGAAAAAGTTGGAGGACCAGGGCAATGTTACTGGAATGTTGGAATATTATTTTCATTTCTT
TATGGGGATGTATGAATTCAGAAGAAAAAAACTAACTGCGGCAATAACTTCATATAGAAAAGCAGAAGCTAAATTAAGTG
AAGTAGATGATGAGATTGAAAAAGCAGAATTCTTTTTTAAAGTATCATATGTTTATTACTATATGAAGCAAACATACTTT
TCGCTTAACTATGCCTATAGAGCTCTTGAAATATATCAAAGGTATGATGATTACTTTATACAGAGATTAAGATGTCAATT
TGTATTAGGTGGAAACTTTATTGACTCCCTAGAATATGAAAAGGCATTGGATACATTTATGGAAGCGTTAAAAATAGCTG
AAGAAATTAAAATTGATTATTTAATTGGGATGGCACACATCAACATAGGTATTTGCTTTGATGAGTTAAAAGACTACAAA
AGTGCATCAAGTCATCTAAAAAAGGCGTTAGATTTGTTAGAGGTTAGCGATCACAGTTTTGTTGCGAAAACTCTTTTTAT
TTTAACACATGTAAAGATCAAGCAAGGTGACAAAGAATCAGCTGGTGACTATTTTCAAAAAGGACATGAGTTTGTAAATA
AAACAAATGATGCTGAATATAATGCTAAATTTAAAATATTAGAAGGACTTTATTTTTCAAATGGTGAATATGAATTGATT
AGTGAGGCTTTTGCATATTTTGATTCAATGAAAATGTATGCAGATTTAGAGAACTATGCTGTTGAAGTGGCCCAATTTTT
TCATCGGAAACAGGATTTTCAACGCTCAAGTGAATATTATATGATGAGTGTTGAAGCAAGAAACAAAATTAAAAAAGGAG
AGATTATTAATGAAACTCAGTCGGGTCATATTGGCAGTAGCGGTGTTAACTAG

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (198-254)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (9-69)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	38.095	96.923	0.369