Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   CJZ70_RS14015 Genome accession   NZ_CP022890
Coordinates   2641950..2642867 (-) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain DKU_NT_02     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2636950..2647867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJZ70_RS13990 (CJZ70_13990) spx 2637307..2637702 (-) 396 WP_014476435.1 transcriptional regulator Spx -
  CJZ70_RS13995 (CJZ70_13995) yjbC 2637883..2638461 (-) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  CJZ70_RS14000 (CJZ70_14000) yjbB 2638625..2639842 (-) 1218 WP_095010820.1 MFS transporter -
  CJZ70_RS14005 (CJZ70_14005) oppF 2639950..2640867 (-) 918 WP_095010700.1 oligopeptide ABC transporter ATP-binding protein OppF -
  CJZ70_RS14010 (CJZ70_14010) oppD 2640869..2641945 (-) 1077 WP_077670618.1 oligopeptide ABC transporter ATP-binding protein OppD -
  CJZ70_RS14015 (CJZ70_14015) amiD 2641950..2642867 (-) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  CJZ70_RS14020 (CJZ70_14020) oppB 2642871..2643806 (-) 936 WP_014479444.1 oligopeptide ABC transporter permease OppB -
  CJZ70_RS14025 (CJZ70_14025) oppA 2643913..2645550 (-) 1638 WP_014479443.1 oligopeptide ABC transporter substrate-binding protein OppA -
  CJZ70_RS14030 (CJZ70_14030) trpS 2646294..2647286 (+) 993 WP_003245134.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=202864 CJZ70_RS14015 WP_003232954.1 2641950..2642867(-) (amiD) [Bacillus subtilis strain DKU_NT_02]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=202864 CJZ70_RS14015 WP_003232954.1 2641950..2642867(-) (amiD) [Bacillus subtilis strain DKU_NT_02]
ATGCAGAACATTCCGAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATTATTATCGTGCTCATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCCCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGGCGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTGTTCTTGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACGGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTTACAGAAGCC
TTTTTAAGCTATTTGGGACTCGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGCTTTAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364

Multiple sequence alignment