Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BI197_RS07185 Genome accession   NZ_CP017747
Coordinates   1526676..1527455 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain SYBC H47     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1521676..1532455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BI197_RS07155 fliH 1521720..1522475 (-) 756 WP_062623354.1 flagellar assembly protein FliH -
  BI197_RS07160 fliG 1522468..1523484 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  BI197_RS07165 fliF 1523497..1525107 (-) 1611 WP_062623353.1 flagellar basal-body MS-ring/collar protein FliF -
  BI197_RS07170 fliE 1525150..1525470 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  BI197_RS07175 flgC 1525481..1525933 (-) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  BI197_RS07180 flgB 1525933..1526322 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  BI197_RS07185 codY 1526676..1527455 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BI197_RS07190 hslU 1527493..1528896 (-) 1404 WP_014305002.1 HslU--HslV peptidase ATPase subunit -
  BI197_RS07195 hslV 1528913..1529458 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  BI197_RS07200 xerC 1529474..1530391 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  BI197_RS07205 trmFO 1530461..1531768 (-) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=202441 BI197_RS07185 WP_003154263.1 1526676..1527455(-) (codY) [Bacillus velezensis strain SYBC H47]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=202441 BI197_RS07185 WP_003154263.1 1526676..1527455(-) (codY) [Bacillus velezensis strain SYBC H47]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACTGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGGGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment