Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   LBS_RS09100 Genome accession   NZ_CP022709
Coordinates   1801214..1803007 (+) Length   597 a.a.
NCBI ID   WP_094365884.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain WiKim0063     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1796214..1808007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LBS_RS09080 (LBS_09080) rpsN 1796866..1797135 (+) 270 WP_011373976.1 30S ribosomal protein S14 -
  LBS_RS09085 (LBS_09085) - 1797456..1798631 (+) 1176 WP_016264571.1 multidrug effflux MFS transporter -
  LBS_RS09090 (LBS_09090) - 1798684..1799355 (-) 672 WP_016264572.1 TetR/AcrR family transcriptional regulator C-terminal domain-containing protein -
  LBS_RS09095 (LBS_09095) - 1799498..1801210 (+) 1713 WP_016264573.1 ABC transporter ATP-binding protein -
  LBS_RS09100 (LBS_09100) rcrQ 1801214..1803007 (+) 1794 WP_094365884.1 ABC transporter ATP-binding protein Regulator
  LBS_RS09105 (LBS_09105) - 1803184..1805232 (-) 2049 WP_035147362.1 UvrD-helicase domain-containing protein -
  LBS_RS09110 (LBS_09110) - 1805634..1806431 (-) 798 WP_016264576.1 tyrosine-protein phosphatase -

Sequence

Protein


Download         Length: 597 a.a.        Molecular weight: 66944.97 Da        Isoelectric Point: 5.6404

>NTDB_id=202352 LBS_RS09100 WP_094365884.1 1801214..1803007(+) (rcrQ) [Latilactobacillus sakei strain WiKim0063]
MKEFKRAMVFFYHYLKRYKPSFAIILVMTVFATYLQVKAPEYIGDALNELVKYATKFQVLKAQHLPTSGASKDAFIDVIV
SLVLFYVLSSAATFVSSAAFSRVNALSTNRMRIGLFNKLQKMQIKYFDRHSDGDILSRFTSDLDNIYNAMNQVLSQLVSG
TALLIGLLIMMFRKDTQLAWVTIASVPISFILAWIIINKAQKYVNVQQDEVGKLNGYINEKITGQKVIITNSLQAETIDG
FVEHNESVRKATLKGQIYSGMIFPLMQGMSLVNTAIVIFFGSWLAVNGDIKKSVALGLVVTFVQYSQQFYNQIAQLSSSY
SMIQLAITGARRVNEVFDEDDEIRPTDGQQFNGIERSVTMEHVDFSYLPGKQILHDVNIEVDKGQMIALVGPTGSGKTTV
MNLMNRFYDVDQGAVKIDGVDIRDMDLDTLRSHVGIVLQESVLFAGTIRDNIVFGKPDVTDDEVIAAAQQAHIHDFIMTL
EDGYQTKVSEEDNVFSTGQKQLISIARTIITDPALLILDEATSNVDTVTESHIQKAMENVIQGRTSFVIAHRLKTILNAD
RIIVLKDGRIIEEGNHQELLAQEGFYAELYNNQFVFE

Nucleotide


Download         Length: 1794 bp        

>NTDB_id=202352 LBS_RS09100 WP_094365884.1 1801214..1803007(+) (rcrQ) [Latilactobacillus sakei strain WiKim0063]
ATGAAAGAATTTAAACGTGCCATGGTCTTTTTCTACCATTATTTAAAACGCTATAAACCATCTTTTGCGATTATCCTTGT
GATGACCGTCTTTGCCACTTATTTACAAGTCAAGGCGCCCGAATATATTGGGGATGCACTGAATGAACTGGTTAAATACG
CCACGAAGTTTCAGGTTTTAAAAGCCCAGCATTTACCAACCAGTGGGGCTTCTAAAGATGCTTTTATTGATGTCATTGTG
TCGTTAGTCCTTTTTTATGTCTTGAGTTCAGCGGCAACCTTTGTCTCAAGCGCCGCTTTTTCACGCGTCAATGCGTTATC
GACCAACCGGATGCGGATTGGGTTATTCAATAAATTACAAAAGATGCAGATTAAATATTTTGATCGTCATTCAGATGGCG
ATATCCTCAGCCGTTTTACGAGTGATTTAGATAATATTTATAACGCGATGAACCAAGTGTTAAGTCAATTAGTGTCGGGA
ACGGCCTTGTTGATTGGTTTGTTAATTATGATGTTTAGAAAAGATACCCAATTGGCGTGGGTTACAATCGCGTCAGTGCC
AATTTCGTTTATTTTAGCGTGGATCATTATCAACAAAGCGCAAAAATACGTCAATGTGCAACAAGATGAAGTGGGTAAGT
TAAATGGTTATATCAATGAAAAAATCACAGGGCAAAAAGTGATTATTACCAACAGCCTACAAGCTGAAACAATTGACGGC
TTTGTTGAACATAATGAAAGTGTCCGGAAAGCAACCTTGAAAGGCCAAATTTATTCAGGGATGATTTTCCCATTGATGCA
AGGGATGTCACTGGTTAATACGGCGATCGTGATCTTCTTTGGGAGCTGGCTAGCGGTCAACGGGGATATCAAAAAATCCG
TTGCTTTAGGATTAGTCGTGACTTTCGTGCAATATTCACAACAATTCTATAATCAAATTGCGCAACTCTCATCAAGTTAC
AGCATGATTCAATTGGCAATTACCGGTGCGCGCCGGGTCAACGAAGTCTTTGATGAAGATGATGAAATTCGTCCAACTGA
TGGACAACAATTCAACGGAATTGAACGTTCAGTAACGATGGAACATGTTGATTTTAGTTACTTACCAGGCAAACAAATCC
TGCACGACGTGAATATTGAGGTTGATAAGGGCCAAATGATTGCGTTGGTTGGACCAACTGGCTCTGGTAAGACGACGGTC
ATGAACTTGATGAACCGGTTCTATGATGTGGATCAAGGCGCCGTTAAGATTGACGGCGTTGATATCCGTGACATGGATTT
AGACACATTGCGGTCACACGTGGGGATTGTTCTTCAAGAATCAGTCTTATTTGCAGGGACGATTCGCGATAACATCGTCT
TTGGGAAACCAGATGTGACTGATGATGAAGTGATTGCAGCGGCGCAACAAGCGCACATTCACGATTTCATCATGACGTTG
GAAGATGGCTATCAAACGAAGGTTAGCGAAGAAGACAACGTCTTTAGTACGGGTCAAAAACAATTGATCAGTATTGCGCG
GACGATTATCACGGATCCAGCGCTCTTGATTTTAGATGAAGCAACAAGTAACGTTGATACGGTGACTGAAAGCCATATCC
AAAAAGCAATGGAAAATGTGATTCAGGGTCGGACTAGTTTTGTGATCGCCCATCGTTTGAAAACCATCTTAAATGCGGAT
CGGATTATCGTTTTAAAAGATGGCCGAATTATCGAAGAAGGCAATCATCAAGAATTACTAGCACAAGAAGGCTTCTACGC
AGAATTGTATAACAATCAATTTGTATTTGAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(26-311)

ABC transporter (ABC_tran)

(374-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

38.803

97.99

0.38