Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   LBS_RS03950 Genome accession   NZ_CP022709
Coordinates   741097..742974 (-) Length   625 a.a.
NCBI ID   WP_094365750.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain WiKim0063     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 736097..747974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LBS_RS03920 (LBS_03920) - 736338..736961 (+) 624 WP_016265269.1 helix-turn-helix transcriptional regulator -
  LBS_RS03925 (LBS_03925) - 736981..737778 (+) 798 WP_016265270.1 pyruvate, water dikinase regulatory protein -
  LBS_RS03930 (LBS_03930) - 737900..738145 (+) 246 WP_016265271.1 hypothetical protein -
  LBS_RS03935 (LBS_03935) - 738195..738839 (-) 645 WP_016265272.1 HD domain-containing protein -
  LBS_RS03940 (LBS_03940) manA 738913..739887 (-) 975 WP_016265273.1 mannose-6-phosphate isomerase, class I -
  LBS_RS03945 (LBS_03945) - 739989..740999 (-) 1011 WP_035146726.1 serine hydrolase domain-containing protein -
  LBS_RS03950 (LBS_03950) rcrQ 741097..742974 (-) 1878 WP_094365750.1 ABC transporter ATP-binding protein Regulator
  LBS_RS03955 (LBS_03955) rcrP 742974..744704 (-) 1731 WP_061827392.1 ABC transporter ATP-binding protein Regulator
  LBS_RS03960 (LBS_03960) - 744728..745369 (-) 642 WP_035146737.1 TetR family transcriptional regulator -
  LBS_RS03965 (LBS_03965) - 745574..746302 (+) 729 WP_011374850.1 ion transporter -
  LBS_RS03970 (LBS_03970) - 746500..746700 (-) 201 WP_004270328.1 cold-shock protein -
  LBS_RS03975 (LBS_03975) - 746902..747558 (+) 657 WP_035146741.1 type II CAAX endopeptidase family protein -
  LBS_RS03980 (LBS_03980) - 747579..747899 (+) 321 WP_011374852.1 hypothetical protein -

Sequence

Protein


Download         Length: 625 a.a.        Molecular weight: 69642.04 Da        Isoelectric Point: 5.2493

>NTDB_id=202317 LBS_RS03950 WP_094365750.1 741097..742974(-) (rcrQ) [Latilactobacillus sakei strain WiKim0063]
MAEKAATNRPQGGHGPGRGMGGVVEKPKNFWGTTNRLLKYMSSRLIALVFVIVLAIVSVIFQIRTPKVLGEATTEIFKGV
MKGNAMQKAGIAMDRLPIDFDKIQHIIMTVILMYLASAVFSFLQQFIMTRISQQTVYELRKELKDKMQRVPINYYDTHSN
GDIMSRAINDMDNIASTLQQSLTQMVTSTVTFIGVLWMMLTISWQLTLIALVTIPLSLIVVGIVAPKSQKFFAAQQKSLG
LLNSQIEENFSGQVVLKTFNREQVTIDTFEEQNEKLYKAAWKAQFISGVIMPLMTFVNNLGYVFVAIIGGIRVSHGQVTL
GDMQAFMQYTQQFSQPISQLANLANTIQSTIASAERVFAVLDEEDMSEEPSTVPVVQDDANQLEMEHVEFGYQGKDLLLT
DYNLQVKPGQMIAIVGPTGAGKTTIINLLERFYDVSGGSIKLKGVDTRDMSREELRSHFAMVLQDTWLFTGTIWDNLKYG
NESASDEAILAAAKAAHVDGFVRQLPEGYNTVLNEEASNISQGQRQLLTIARAFVADPDILILDEATSSVDTRTEIHIQH
AMERLLQNRTSFVVAHRLSTIRDADNIIVMNHGSIMETGTHDELMVQDGFYADLYNSQFSGNVEI

Nucleotide


Download         Length: 1878 bp        

>NTDB_id=202317 LBS_RS03950 WP_094365750.1 741097..742974(-) (rcrQ) [Latilactobacillus sakei strain WiKim0063]
ATGGCAGAAAAAGCAGCAACAAACCGGCCACAAGGTGGTCACGGTCCAGGTCGCGGCATGGGTGGCGTCGTTGAAAAGCC
TAAGAATTTCTGGGGCACAACTAATCGTTTATTGAAATACATGTCGAGCCGTTTAATTGCCTTAGTATTTGTCATTGTTT
TGGCGATTGTCTCCGTTATTTTCCAGATTAGAACGCCCAAAGTTTTAGGGGAAGCAACAACTGAAATCTTTAAAGGGGTG
ATGAAAGGCAATGCCATGCAAAAAGCTGGGATTGCAATGGATCGCTTACCAATTGATTTCGATAAGATTCAACACATTAT
CATGACGGTGATCTTGATGTATCTTGCTTCAGCCGTCTTCAGTTTCTTACAACAATTTATTATGACGCGGATTTCACAAC
AAACCGTCTATGAATTGCGTAAGGAATTGAAAGATAAGATGCAACGAGTGCCAATCAATTATTACGATACCCATTCAAAC
GGGGATATCATGAGTCGTGCGATTAATGATATGGATAATATTGCCAGCACGCTACAACAAAGTTTAACGCAAATGGTGAC
CAGCACGGTAACGTTTATCGGTGTTTTATGGATGATGCTGACGATCAGTTGGCAATTAACGCTGATTGCTTTGGTCACAA
TTCCGTTGAGTTTAATTGTCGTTGGGATTGTCGCACCTAAGTCGCAAAAATTCTTTGCTGCACAACAAAAGAGTTTAGGC
TTATTAAATAGTCAAATCGAAGAAAACTTTTCCGGTCAAGTGGTCTTGAAGACCTTTAACCGGGAACAAGTGACGATTGA
TACGTTTGAAGAACAAAATGAAAAGTTGTATAAAGCTGCTTGGAAAGCCCAATTTATCTCTGGGGTGATCATGCCATTGA
TGACTTTCGTCAATAACTTAGGGTACGTCTTCGTTGCGATTATCGGTGGGATTCGCGTCTCACACGGTCAAGTCACATTA
GGGGACATGCAGGCTTTCATGCAATATACACAACAATTCTCACAACCAATCTCACAATTGGCTAACTTGGCAAACACAAT
TCAATCAACGATTGCTTCAGCTGAACGGGTTTTTGCTGTTTTAGATGAAGAAGATATGTCTGAAGAACCTTCAACTGTCC
CAGTTGTGCAAGATGATGCCAACCAATTAGAAATGGAACATGTTGAATTTGGTTACCAAGGCAAGGATCTCTTGTTGACG
GACTATAATTTACAAGTTAAACCGGGCCAAATGATCGCGATTGTTGGTCCTACCGGGGCTGGTAAGACAACTATTATTAA
TTTACTTGAACGTTTCTACGATGTTAGTGGCGGTTCGATTAAATTAAAAGGTGTCGATACACGTGATATGAGTCGGGAAG
AATTGCGGAGTCATTTTGCGATGGTTCTTCAAGATACTTGGCTATTCACCGGGACGATTTGGGATAACTTGAAGTACGGT
AATGAATCAGCTTCAGACGAAGCGATTTTGGCAGCTGCTAAAGCAGCCCATGTTGATGGCTTTGTTCGTCAATTACCTGA
AGGTTATAACACAGTCTTGAATGAAGAAGCTTCAAATATTTCACAAGGTCAACGGCAATTATTGACGATTGCCCGGGCCT
TTGTGGCCGATCCAGATATCTTAATCTTGGATGAAGCAACCAGTTCTGTTGATACGCGGACTGAAATTCATATCCAACAC
GCAATGGAACGTCTATTGCAAAATCGAACGAGTTTCGTTGTTGCCCATCGTTTATCAACGATTCGGGATGCGGATAATAT
CATTGTGATGAATCACGGTTCAATTATGGAAACCGGCACACATGATGAATTGATGGTTCAAGACGGCTTTTACGCTGATC
TATATAACAGCCAATTCTCAGGGAACGTCGAGATTTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(49-336)

ABC transporter (ABC_tran)

(399-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

44.464

92.48

0.411