Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   BS1321_RS21025 Genome accession   NZ_CP017704
Coordinates   4367773..4370178 (+) Length   801 a.a.
NCBI ID   WP_063232955.1    Uniprot ID   -
Organism   Peribacillus simplex NBRC 15720 = DSM 1321     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4362773..4375178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS1321_RS21005 (BS1321_20690) cymR 4364178..4364597 (+) 420 WP_034308657.1 cysteine metabolism transcriptional regulator CymR -
  BS1321_RS21010 (BS1321_20695) - 4364658..4365803 (+) 1146 WP_063232953.1 cysteine desulfurase family protein -
  BS1321_RS21015 (BS1321_20700) mnmA 4365833..4366948 (+) 1116 WP_063232954.1 tRNA 2-thiouridine(34) synthase MnmA -
  BS1321_RS21020 (BS1321_20705) - 4367071..4367736 (+) 666 WP_063233023.1 tetratricopeptide repeat protein -
  BS1321_RS21025 (BS1321_20710) recD2 4367773..4370178 (+) 2406 WP_063232955.1 ATP-dependent RecD-like DNA helicase Machinery gene
  BS1321_RS21030 (BS1321_20715) - 4370268..4370837 (+) 570 WP_411836499.1 LemA family protein -
  BS1321_RS21035 (BS1321_20720) - 4370837..4371610 (+) 774 WP_063232957.1 TPM domain-containing protein -
  BS1321_RS21040 (BS1321_20725) - 4371758..4372216 (+) 459 WP_063232958.1 PRC-barrel domain-containing protein -
  BS1321_RS21045 (BS1321_20730) - 4372206..4372421 (+) 216 WP_063233024.1 hypothetical protein -
  BS1321_RS21050 (BS1321_20735) - 4372648..4373724 (+) 1077 WP_063232959.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 801 a.a.        Molecular weight: 90452.23 Da        Isoelectric Point: 4.8760

>NTDB_id=202068 BS1321_RS21025 WP_063232955.1 4367773..4370178(+) (recD2) [Peribacillus simplex NBRC 15720 = DSM 1321]
MSQQDSLDLFSEEKMFMKGSHLVTIFHNEENMYSVVRIRVHETNLNYEEKEAVVTGYFPRMHEDEIYIFYGAMKEHPRFG
LQFHVEHFRKDLPQSKEGIVSYLSGDLFKGIGKKTAESIVETLGEKAISKILAQPSLLDDIPKLSGEKAKGLYDTLVEHQ
GLEQVMIALNQYGFGPQLSMKIYQMYKQDTITMVQGNPYKLVEDIEGIGFGRADELGHHLGISGSHPDRIKAACLYTLES
QCLQDGNIYIEAEQLLEAVKRLLEENKRDRIEFTNISSEIIELTQEGKIVVEDQRIYPPSLFYSEKGIVMNIKRLLAQTD
YEDQFPESEFLLALGELEERLDVSYAPAQKEAIQTALQSPMLILTGGPGTGKTTVIKGIVELYAELHGVSMDINDYKKEG
SDPFPFVLAAPTGRAAKRMAESTGLPAVTIHRLLGWNGSEGFSHDEDNQLDGRIVIIDEVSMVDTWLAHQLFKALPENVQ
VILVGDEDQLPSVGPGQVLKDLLASNCVPTVSLEHIYRQADGSSIIELAHEIKKGRLPDDVTKQQEDRSFIRCQTGQIPQ
VIEKVVANARTKGFTAKDIQVLAPMYRGPAGIDALNKMLQEVFNSNANEKRREIKFGDVIYRTGDKVLQLVNQPEEGVFN
GDMGEVVSILFAKENTDSVDKVIISFEGIEVTYTKQDLNQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTA
ITRSKNFLILCGEEDAFRLGIERNDEMRRKTTLREKLREILSEEEMPVEKGEAHQKSSYLDILMHADPMIGMENVTPYDF
M

Nucleotide


Download         Length: 2406 bp        

>NTDB_id=202068 BS1321_RS21025 WP_063232955.1 4367773..4370178(+) (recD2) [Peribacillus simplex NBRC 15720 = DSM 1321]
TTGAGCCAGCAAGATTCGTTGGATTTGTTTTCAGAAGAGAAAATGTTTATGAAAGGGAGTCATTTAGTGACGATCTTTCA
TAATGAAGAAAATATGTACTCGGTTGTAAGAATTCGCGTGCATGAAACGAATCTGAATTATGAAGAGAAGGAAGCGGTCG
TAACAGGTTATTTTCCAAGGATGCATGAGGATGAGATCTATATTTTTTATGGGGCCATGAAGGAACATCCGCGTTTTGGC
CTTCAATTCCATGTAGAGCATTTCCGCAAGGATCTGCCTCAATCCAAGGAAGGCATCGTCAGTTATTTATCAGGTGACCT
TTTTAAGGGCATTGGGAAAAAAACAGCCGAAAGCATTGTTGAGACTCTGGGTGAAAAGGCAATTTCAAAAATTCTGGCTC
AGCCTTCGCTACTTGATGATATCCCGAAGCTATCTGGGGAAAAGGCAAAGGGCCTCTATGATACATTGGTCGAGCATCAA
GGTCTGGAGCAGGTGATGATTGCCCTGAATCAATATGGTTTCGGTCCGCAGCTGTCGATGAAGATATATCAAATGTACAA
ACAGGATACGATCACGATGGTTCAGGGAAATCCGTATAAGCTCGTGGAGGATATTGAAGGGATTGGTTTTGGACGGGCGG
ATGAGCTTGGGCATCATCTTGGCATTTCCGGCAGCCATCCCGACCGTATCAAGGCGGCGTGCTTGTATACGCTTGAATCC
CAATGTCTCCAGGACGGGAATATCTACATAGAAGCCGAGCAGTTATTGGAAGCGGTCAAACGTCTGCTGGAGGAAAATAA
ACGGGATCGCATTGAGTTCACGAACATTTCCTCGGAAATAATCGAATTGACGCAAGAGGGGAAAATAGTTGTCGAGGATC
AACGGATTTATCCGCCTTCGCTATTCTATTCGGAAAAGGGAATCGTGATGAACATCAAGAGGCTGCTTGCTCAAACCGAT
TATGAAGACCAGTTCCCGGAATCGGAGTTCTTGCTGGCACTTGGGGAGCTGGAAGAGCGGCTGGATGTTTCTTATGCCCC
GGCCCAAAAGGAAGCGATCCAAACAGCCCTGCAATCACCCATGTTAATCTTGACGGGCGGACCGGGTACCGGTAAGACGA
CAGTCATCAAAGGCATCGTTGAGCTATATGCAGAGCTGCATGGTGTATCCATGGACATTAATGATTATAAAAAAGAAGGA
AGCGATCCATTTCCATTCGTACTTGCGGCTCCTACTGGCCGTGCAGCGAAACGCATGGCCGAATCGACTGGGCTCCCAGC
TGTTACGATCCACCGTTTGCTGGGGTGGAACGGGAGTGAAGGCTTTTCCCATGATGAGGATAATCAGCTGGATGGCCGTA
TCGTAATCATCGATGAGGTTTCCATGGTGGATACGTGGCTTGCCCATCAATTGTTTAAAGCTCTGCCGGAAAATGTTCAA
GTGATATTGGTTGGTGATGAAGATCAGCTGCCATCTGTTGGCCCTGGGCAGGTTTTAAAGGATTTGCTTGCATCGAATTG
TGTACCGACTGTCAGTCTGGAACATATTTATCGTCAAGCTGATGGTTCATCGATCATTGAACTGGCCCATGAAATCAAAA
AAGGAAGGCTTCCGGATGATGTCACGAAACAGCAAGAAGATCGATCGTTCATTCGCTGCCAAACCGGTCAAATCCCCCAA
GTAATCGAGAAAGTGGTTGCCAATGCCAGGACGAAAGGCTTCACGGCCAAGGATATACAGGTGCTGGCTCCCATGTATAG
AGGGCCTGCCGGGATTGATGCATTGAATAAAATGCTTCAGGAAGTGTTCAATAGCAATGCGAATGAAAAGAGGCGGGAAA
TAAAATTCGGAGATGTGATATACAGAACGGGAGATAAGGTGCTTCAACTGGTGAACCAGCCAGAGGAGGGTGTCTTTAAT
GGCGATATGGGTGAAGTCGTCTCCATATTGTTCGCTAAAGAAAATACCGATTCTGTCGATAAAGTAATCATATCGTTCGA
AGGCATCGAAGTGACTTACACGAAACAGGACTTGAACCAGATTACACATGCTTACTGCTGTTCCATCCATAAGTCGCAGG
GAAGCGAATTCCCGATTGTCATTTTACCTGTAGTGAAAAGTTATTATCGGATGCTCCGCCGTAATTTATTGTATACGGCG
ATTACCCGCAGTAAAAATTTCTTGATCCTTTGTGGTGAAGAAGATGCATTCCGTCTAGGGATCGAGCGTAATGATGAAAT
GCGCCGGAAAACGACTTTGCGTGAAAAGCTGCGGGAGATTTTGAGTGAGGAAGAAATGCCGGTGGAAAAGGGAGAGGCAC
ATCAAAAATCAAGTTATCTTGATATTCTCATGCATGCTGACCCGATGATCGGGATGGAGAATGTCACGCCTTATGATTTT
ATGTAG

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-666)

AAA domain (AAA_30)

(345-555)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

62.672

100

0.627

Multiple sequence alignment