Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   CGP84_RS06225 Genome accession   NZ_CP022682
Coordinates   1231770..1232543 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain 78     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1226770..1237543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGP84_RS06205 (CGP84_01141) trmFO 1227114..1228421 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  CGP84_RS06210 (CGP84_01142) xerC 1228838..1229734 (+) 897 WP_001015611.1 tyrosine recombinase XerC -
  CGP84_RS06215 (CGP84_01143) hslV 1229731..1230276 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  CGP84_RS06220 (CGP84_01144) hslU 1230342..1231745 (+) 1404 WP_115288386.1 ATP-dependent protease ATPase subunit HslU -
  CGP84_RS06225 (CGP84_01145) codY 1231770..1232543 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  CGP84_RS06230 - 1232594..1232686 (+) 93 WP_031788481.1 hypothetical protein -
  CGP84_RS06235 (CGP84_01146) rpsB 1232885..1233652 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  CGP84_RS06240 - 1233686..1233799 (+) 114 WP_001789890.1 hypothetical protein -
  CGP84_RS06245 (CGP84_01147) tsf 1233834..1234715 (+) 882 WP_000201387.1 translation elongation factor Ts -
  CGP84_RS06250 (CGP84_01148) pyrH 1234852..1235574 (+) 723 WP_000057330.1 UMP kinase -
  CGP84_RS06255 (CGP84_01149) frr 1235593..1236147 (+) 555 WP_001280006.1 ribosome recycling factor -
  CGP84_RS06260 (CGP84_01150) - 1236520..1237290 (+) 771 WP_047213393.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=202063 CGP84_RS06225 WP_000055337.1 1231770..1232543(+) (codY) [Staphylococcus aureus strain 78]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=202063 CGP84_RS06225 WP_000055337.1 1231770..1232543(+) (codY) [Staphylococcus aureus strain 78]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCGATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428