Detailed information NTG0201904

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: GD3902_RS13945
• Genome accession: NZ_CP017694
• Coordinates: 2762526..2764889 (+)
• Length: 787 a.a.
• NCBI ID: WP_029760677.1
• Uniprot ID: -
• Organism: Geobacillus thermodenitrificans strain KCTC3902
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2757526..2769889

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GD3902_RS13920 (GD3902_13640)	-	2758372..2758803 (+)	432	WP_230459201.1	YczE/YyaS/YitT family protein	-
GD3902_RS18495	-	2758833..2759027 (+)	195	WP_230459202.1	hypothetical protein	-
GD3902_RS13925 (GD3902_13645)	cymR	2759027..2759443 (+)	417	WP_008881024.1	cysteine metabolism transcriptional regulator CymR	-
GD3902_RS13930 (GD3902_13650)	-	2759466..2760608 (+)	1143	WP_011887880.1	cysteine desulfurase family protein	-
GD3902_RS13935 (GD3902_13655)	mnmA	2760622..2761737 (+)	1116	WP_029760676.1	tRNA 2-thiouridine(34) synthase MnmA	-
GD3902_RS13940 (GD3902_13660)	-	2761846..2762508 (+)	663	WP_008881021.1	tetratricopeptide repeat protein	-
GD3902_RS13945 (GD3902_13665)	recD2	2762526..2764889 (+)	2364	WP_029760677.1	ATP-dependent RecD-like DNA helicase	Machinery gene
GD3902_RS13950 (GD3902_13670)	-	2764915..2765388 (+)	474	WP_008881019.1	PRC-barrel domain-containing protein	-
GD3902_RS13955 (GD3902_13675)	-	2765404..2765595 (+)	192	WP_008881018.1	hypothetical protein	-
GD3902_RS13960	-	2765607..2765741 (+)	135	WP_008881017.1	YrzQ family protein	-
GD3902_RS13965 (GD3902_13680)	-	2765864..2766925 (+)	1062	WP_008881016.1	AI-2E family transporter	-
GD3902_RS13970 (GD3902_13685)	alaS	2767242..2769878 (+)	2637	WP_029760678.1	alanine--tRNA ligase	-

Sequence

Protein

• Length: 787 a.a.
• Molecular weight: 86371.74 Da
• Isoelectric Point: 5.0347

>NTDB_id=201904 GD3902_RS13945 WP_029760677.1 2762526..2764889(+) (recD2) [Geobacillus thermodenitrificans strain KCTC3902]
MQEQQSLALDGRTFIKGVCLAVIFHNEETLYTVVRIRVEETNEAAAEEEVVVTGYFPRLNEGDVYIFYGQFRQHPRFGRQ
YAAEQFRKQLPNTKEGVIDYLSSGLFKGIGKKTATAIVDALGENAIAAILRDPGALERVPKLTKQKAKQLYETLCAHEGL
EQTMIALAQLGFGPQLAMKIYQVYGEETMDIIHENPYKLVEDIEGIGFGRADELGRQLGISGSHPARLRAACLFVLEQAC
LQEGHVYMKKEELVSRIGELLGGRSNGAVDGQAIEQTLLMLSEEGKMIAEQGRYYLPSLYFAEKGIASNIRRLLGQTPPS
ASFPESEFLLALGALEERLGMQYAPQQKEAIQRALSSPLFILTGGPGTGKTTVIKGIVELFAVLNGISLSPDDYKNGEPF
PVLLAAPTGRAAKRMSEATGLPAATIHRLLGWNGAEGFSHDEHEPIAGKLLVVDEVSMVDTWLANHLLKAVPNGMQVIFV
GDEDQLPSVGPGQVLKDLLESGVIPSVRLTEVYRQAEGSSIIELAHEMKRGNVPADLTAPKADRSFIRCRAGQVASVVRQ
IAENARNKGFSVKDIQVLAPMYRGPAGIDQLNKVLQELFNPPTDGKRELSVGDVVYRVGDKVLQLVNQPEDNVFNGDIGE
VVAIFYAKENTEKQDLLVVSFDGIEVTYTRQDLAQITHAYCCSVHKAQGSEFPIVILPVVKSYYRMLKRNLLYTAVTRSK
QFLILCGEEEAFRFGVAQRGDGARQTALAEKLAASTALFVEGELPLEDANIGMENVTPYDFMDDGSS

Nucleotide

• Length: 2364 bp

>NTDB_id=201904 GD3902_RS13945 WP_029760677.1 2762526..2764889(+) (recD2) [Geobacillus thermodenitrificans strain KCTC3902]
TTGCAAGAGCAGCAATCGCTTGCGCTGGACGGCCGCACGTTTATTAAAGGGGTGTGTTTGGCCGTCATTTTTCATAACGA
GGAGACGTTGTATACCGTTGTCCGTATCCGCGTCGAAGAAACGAATGAAGCGGCTGCGGAGGAAGAAGTGGTCGTCACCG
GCTATTTTCCACGTTTAAATGAAGGGGACGTGTACATCTTTTACGGGCAATTCCGCCAACATCCGCGCTTTGGCCGCCAG
TATGCGGCCGAGCAGTTCCGCAAACAGCTTCCGAACACGAAAGAAGGAGTCATCGATTATTTGTCGAGCGGCTTGTTTAA
GGGGATCGGCAAAAAAACAGCGACAGCGATTGTCGATGCGCTTGGTGAAAACGCGATCGCCGCCATTTTGCGTGATCCAG
GAGCGCTCGAACGCGTGCCCAAGCTGACGAAACAAAAAGCGAAGCAATTGTACGAAACGCTCTGCGCCCACGAAGGGCTC
GAACAGACGATGATCGCCCTCGCTCAGCTCGGTTTTGGTCCACAGCTGGCAATGAAAATTTACCAAGTATACGGCGAAGA
GACAATGGACATCATTCATGAAAACCCGTACAAGCTCGTCGAAGATATTGAAGGGATCGGTTTTGGTCGCGCCGATGAGC
TCGGGCGGCAGCTCGGCATTTCCGGCAGTCATCCAGCCCGGCTGCGCGCCGCTTGTCTGTTTGTCCTTGAGCAGGCATGC
TTGCAAGAAGGGCACGTCTACATGAAGAAAGAAGAGCTCGTCAGCCGCATTGGGGAGCTGCTTGGCGGAAGGTCGAACGG
AGCGGTTGATGGACAAGCCATCGAACAGACGCTCCTTATGTTAAGCGAAGAAGGAAAGATGATCGCGGAACAAGGCCGCT
ATTATCTTCCTTCGCTTTACTTCGCCGAAAAAGGGATCGCTTCTAACATTCGGCGGTTGCTCGGGCAAACGCCACCATCG
GCCTCATTTCCGGAGTCGGAGTTTTTGCTGGCGCTCGGGGCGCTTGAAGAACGACTCGGGATGCAATATGCTCCGCAGCA
AAAAGAAGCGATTCAACGGGCGCTGTCTTCGCCGCTCTTTATTTTGACGGGAGGTCCAGGAACAGGAAAAACAACGGTCA
TTAAAGGAATTGTTGAGCTGTTTGCGGTTCTAAATGGCATATCACTTTCCCCCGACGATTACAAAAACGGTGAACCGTTT
CCTGTGCTGCTCGCTGCTCCGACTGGACGGGCTGCAAAGCGGATGAGTGAGGCGACCGGGCTGCCGGCGGCGACGATTCA
CCGGCTGCTCGGCTGGAATGGAGCGGAAGGGTTCAGCCACGATGAACATGAGCCGATTGCCGGTAAGCTGCTTGTCGTCG
ATGAGGTGTCGATGGTCGATACGTGGTTGGCTAATCACCTGTTAAAAGCGGTGCCTAATGGGATGCAAGTCATCTTCGTT
GGCGATGAAGACCAGCTTCCATCCGTCGGGCCAGGGCAAGTGTTGAAAGATTTGCTCGAGTCGGGTGTTATCCCGTCCGT
GCGGCTGACCGAGGTGTACCGCCAGGCGGAAGGGTCATCGATTATCGAGCTCGCCCATGAGATGAAGCGTGGGAACGTGC
CGGCCGACTTGACTGCCCCGAAGGCGGATCGTTCGTTCATCCGCTGCCGCGCCGGACAAGTGGCTAGTGTCGTGCGTCAA
ATCGCCGAAAATGCGCGTAACAAAGGGTTTTCCGTCAAAGACATTCAAGTGCTCGCTCCGATGTACCGCGGCCCAGCCGG
TATCGATCAGCTAAACAAAGTGCTGCAGGAGCTGTTTAATCCACCAACGGATGGGAAGCGAGAACTTTCCGTTGGCGACG
TAGTGTATCGCGTCGGCGATAAAGTGCTCCAGCTCGTCAATCAACCGGAAGACAACGTGTTTAACGGCGATATCGGTGAA
GTCGTGGCCATTTTTTATGCCAAAGAAAATACAGAAAAGCAAGATTTGCTCGTCGTCTCATTTGACGGCATTGAAGTGAC
GTATACAAGGCAAGATTTAGCGCAAATTACCCATGCATATTGCTGCTCCGTCCATAAGGCGCAAGGGAGCGAGTTTCCGA
TTGTCATTTTGCCTGTTGTCAAAAGTTATTACCGGATGTTGAAGCGGAATTTGTTGTATACGGCGGTGACAAGAAGCAAA
CAATTTCTGATTTTATGCGGGGAGGAAGAAGCATTCCGGTTTGGTGTTGCCCAGAGGGGCGACGGAGCGCGCCAGACGGC
GCTTGCAGAAAAGTTGGCGGCTTCGACTGCGCTGTTTGTCGAAGGGGAACTGCCGCTTGAGGATGCGAACATCGGGATGG
AAAACGTTACGCCGTATGACTTTATGGACGATGGGTCAAGCTAA

Domains

Predicted by InterproScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (591-661)

• AAA domain (AAA_30) (342-549)

• Helix-hairpin-helix containing domain (HHH_RecD2) (157-247)

• Helix-hairpin-helix domain (HHH_5) (107-153)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (678-726)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	59.925	100	0.606