Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   GD3902_RS13860 Genome accession   NZ_CP017694
Coordinates   2742956..2745313 (+) Length   785 a.a.
NCBI ID   WP_029760671.1    Uniprot ID   -
Organism   Geobacillus thermodenitrificans strain KCTC3902     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2737956..2750313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GD3902_RS13845 (GD3902_13565) - 2739188..2739478 (+) 291 WP_008881041.1 post-transcriptional regulator -
  GD3902_RS13850 (GD3902_13570) secDF 2739598..2741850 (+) 2253 WP_029760668.1 protein translocase subunit SecDF -
  GD3902_RS13855 (GD3902_13575) - 2741996..2742898 (+) 903 WP_029760669.1 cation diffusion facilitator family transporter -
  GD3902_RS13860 (GD3902_13580) recJ 2742956..2745313 (+) 2358 WP_029760671.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  GD3902_RS13865 (GD3902_13585) - 2745313..2745825 (+) 513 WP_008881037.1 adenine phosphoribosyltransferase -
  GD3902_RS13870 (GD3902_13590) - 2745967..2748165 (+) 2199 WP_011887887.1 RelA/SpoT family protein -
  GD3902_RS13875 (GD3902_13595) dtd 2748188..2748646 (+) 459 WP_008881035.1 D-aminoacyl-tRNA deacylase -
  GD3902_RS18220 - 2748725..2748898 (+) 174 WP_008881034.1 hypothetical protein -
  GD3902_RS13880 (GD3902_13600) ahpC 2749256..2749819 (+) 564 WP_008881033.1 alkyl hydroperoxide reductase subunit C -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 86734.17 Da        Isoelectric Point: 5.1627

>NTDB_id=201903 GD3902_RS13860 WP_029760671.1 2742956..2745313(+) (recJ) [Geobacillus thermodenitrificans strain KCTC3902]
MLKAKTRWEVDCPDEQTVRRLAEEADIAPLLAKLLVRRGVRTAAEAAAFLDPLGQPFHDPFLLDGMERAVRRLERAINTG
ELVLVYGDYDADGVCSTSVMVSALKEAGASVEFYIPNRFTEGYGPNLAAFRAAKERGVSVIVTVDNGIAAVDEIAAANEW
GLDVIVTDHHEPGPVLPEAYAIIHPKKPGSTYPFRDLAGVGVAFKVAHALLGRVPRHLLDLVAIGTIADLVPLVGENRLL
AAQGLEALRETNRVGLRALWRQCRIDAMTVNEQTVGFAIAPRLNAAGRLGGADPAVALLMTDDEGEAARLAQEMDELNRE
RQQLVAQMAEEAAEMVRRQFPPEEHRVLVVAGEGWNPGVVGIVASKLVEQFYRPAVVLSMDREKGIAKGSARSIHGFDLF
ASLSQCRDILPHFGGHPMAAGMTLALDDVEELRERLNAIAARTLSDDDFTPPTFIDAACSVDELTLSAARSFERLAPFGV
SNPRPLLLIEEVAVETMRRVGANGAHMKAVFSQNGAAIDAIGFGLGPLCEEIAPGACVSAVGELSVNEWNGLAKPQLSLC
DVAVSSCQVFDVRGCRDVHPLIERMPKEKRLLVLFRRETENQLDLAAFRDELHYVASDEEAGALAIDGRYVVLLDLPPKL
RRLAVLLGNGQPERIYAVFAQPEAQFFRTFPTRDHFKWFYAFLHKYRSFPLAERGGQLARARGWTEETVHFMAKVFLELE
FIREQDGVISLVHAPEKRDLHESPTYRRRRDELEVEQQLLYSTYEQLKRCLAEMTRSQTYEEANV

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=201903 GD3902_RS13860 WP_029760671.1 2742956..2745313(+) (recJ) [Geobacillus thermodenitrificans strain KCTC3902]
ATGTTAAAAGCGAAAACGCGTTGGGAAGTAGATTGCCCCGACGAACAGACGGTGAGGCGGCTGGCCGAGGAAGCCGACAT
CGCGCCGTTGTTAGCAAAGCTTCTTGTCCGCCGTGGCGTGCGGACGGCAGCGGAAGCGGCCGCGTTTCTTGATCCCCTTG
GACAGCCGTTTCATGATCCGTTTCTACTTGATGGGATGGAACGGGCGGTTCGGCGCTTAGAGCGGGCGATCAACACCGGC
GAACTTGTGCTTGTCTATGGCGACTATGATGCCGATGGCGTCTGCAGTACGTCGGTGATGGTGAGCGCCCTTAAAGAGGC
GGGAGCGTCGGTCGAATTCTACATTCCCAATCGCTTTACGGAAGGATACGGTCCGAATCTGGCGGCATTTCGTGCCGCGA
AAGAGCGGGGCGTGTCCGTTATTGTGACGGTCGACAATGGAATTGCAGCGGTCGATGAAATCGCTGCCGCTAATGAGTGG
GGGCTTGATGTCATTGTGACCGACCACCATGAACCGGGTCCGGTGTTACCGGAGGCGTACGCGATCATTCATCCGAAAAA
GCCGGGAAGTACATACCCGTTTCGCGATTTGGCCGGCGTCGGCGTCGCATTTAAAGTTGCTCATGCGTTGCTTGGACGGG
TGCCGCGCCATTTGCTTGATTTGGTAGCGATCGGGACGATTGCCGACTTAGTGCCGCTCGTTGGGGAAAACCGTCTGCTC
GCCGCACAAGGGCTCGAGGCGCTGCGCGAAACGAACCGCGTTGGGTTGCGCGCCCTTTGGCGGCAATGCCGTATTGATGC
GATGACAGTAAATGAACAGACGGTCGGTTTTGCTATCGCGCCGCGGCTGAATGCGGCCGGCCGCCTCGGCGGCGCCGATC
CGGCCGTGGCGCTGTTAATGACAGACGATGAGGGCGAAGCCGCACGGTTGGCCCAAGAAATGGATGAACTAAACCGTGAA
CGCCAGCAGCTTGTGGCGCAAATGGCTGAAGAAGCGGCAGAGATGGTACGGCGTCAGTTTCCGCCTGAAGAGCATCGCGT
TCTTGTTGTCGCGGGTGAAGGATGGAATCCGGGGGTTGTTGGCATCGTTGCCTCGAAACTTGTTGAGCAGTTTTATCGTC
CAGCGGTTGTGCTTTCGATGGATCGGGAAAAAGGAATCGCCAAAGGGTCGGCTCGCAGCATTCACGGCTTTGACCTCTTT
GCAAGTTTATCGCAATGTCGTGACATTTTGCCTCATTTTGGTGGCCATCCGATGGCGGCGGGAATGACCTTAGCGCTTGA
TGATGTCGAAGAACTGCGGGAGCGGTTGAATGCCATCGCCGCTAGGACGTTGTCAGATGATGATTTTACACCGCCGACGT
TTATTGATGCTGCCTGCTCTGTTGATGAGCTGACGTTGTCGGCCGCGCGCAGCTTTGAGCGGCTTGCCCCGTTTGGTGTC
AGCAATCCGCGGCCGCTTCTTCTTATTGAAGAGGTGGCGGTTGAAACGATGCGCCGCGTCGGAGCGAACGGCGCCCATAT
GAAAGCGGTCTTTTCCCAAAATGGTGCAGCGATTGATGCCATTGGCTTCGGTCTCGGGCCGCTTTGCGAGGAGATCGCCC
CTGGGGCGTGCGTCTCGGCCGTCGGAGAGCTTTCGGTAAATGAATGGAACGGGTTAGCGAAGCCGCAGTTGTCGTTATGT
GATGTAGCGGTAAGCAGCTGCCAAGTGTTTGATGTCCGCGGCTGCCGCGATGTCCACCCGCTTATTGAGCGAATGCCGAA
AGAGAAACGGCTGCTTGTCCTGTTTCGCCGCGAAACCGAAAATCAATTAGATTTGGCGGCGTTTCGCGACGAACTTCATT
ATGTAGCAAGTGATGAAGAGGCGGGCGCCTTGGCGATTGACGGCCGCTATGTCGTGCTGCTTGACTTGCCGCCAAAGCTC
CGCCGACTCGCTGTCTTGCTTGGCAACGGGCAGCCGGAGCGCATTTACGCGGTGTTTGCGCAGCCGGAAGCGCAGTTTTT
TCGCACGTTTCCGACGCGCGACCATTTTAAATGGTTTTATGCCTTTTTGCATAAATACCGTTCGTTTCCGCTCGCCGAGC
GGGGCGGACAGCTGGCGCGCGCCCGTGGCTGGACGGAAGAGACGGTTCATTTTATGGCGAAAGTATTTTTAGAGCTTGAG
TTTATTCGCGAACAAGACGGCGTCATCTCACTTGTCCATGCGCCAGAGAAGCGTGATTTGCATGAATCACCGACATATCG
CCGCCGGCGGGACGAGCTTGAGGTGGAACAGCAGTTATTATATTCCACTTATGAGCAGTTGAAACGCTGTTTAGCAGAAA
TGACACGTTCGCAAACGTACGAGGAGGCAAACGTATAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(83-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-771)

RecJ OB domain (RecJ_OB)

(455-560)

DHHA1 domain (DHHA1)

(311-439)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

53.257

99.745

0.531

Multiple sequence alignment