Detailed information NTG0201855

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: GTID1_RS15210
• Genome accession: NZ_CP017690
• Coordinates: 3061241..3063604 (+)
• Length: 787 a.a.
• NCBI ID: WP_008881020.1
• Uniprot ID: A0A0Q0ZBY2
• Organism: Geobacillus thermodenitrificans strain ID-1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3056241..3068604

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GTID1_RS15185 (GTID1_14860)	-	3057086..3057742 (+)	657	WP_008881025.1	YczE/YyaS/YitT family protein	-
GTID1_RS15190 (GTID1_14865)	cymR	3057742..3058158 (+)	417	WP_008881024.1	cysteine metabolism transcriptional regulator CymR	-
GTID1_RS15195 (GTID1_14870)	-	3058181..3059323 (+)	1143	WP_008881023.1	cysteine desulfurase family protein	-
GTID1_RS15200 (GTID1_14875)	mnmA	3059337..3060452 (+)	1116	WP_081156967.1	tRNA 2-thiouridine(34) synthase MnmA	-
GTID1_RS15205 (GTID1_14880)	-	3060561..3061223 (+)	663	WP_008881021.1	tetratricopeptide repeat protein	-
GTID1_RS15210 (GTID1_14885)	recD2	3061241..3063604 (+)	2364	WP_008881020.1	ATP-dependent RecD-like DNA helicase	Machinery gene
GTID1_RS15215 (GTID1_14890)	-	3063630..3064103 (+)	474	WP_099233327.1	PRC-barrel domain-containing protein	-
GTID1_RS15220 (GTID1_14895)	-	3064119..3064310 (+)	192	WP_008881018.1	hypothetical protein	-
GTID1_RS15225	-	3064322..3064456 (+)	135	WP_008881017.1	YrzQ family protein	-
GTID1_RS15230 (GTID1_14900)	-	3064579..3065640 (+)	1062	WP_008881016.1	AI-2E family transporter	-
GTID1_RS15235 (GTID1_14905)	alaS	3065957..3068593 (+)	2637	WP_008881015.1	alanine--tRNA ligase	-

Sequence

Protein

• Length: 787 a.a.
• Molecular weight: 86348.70 Da
• Isoelectric Point: 4.9895

>NTDB_id=201855 GTID1_RS15210 WP_008881020.1 3061241..3063604(+) (recD2) [Geobacillus thermodenitrificans strain ID-1]
MQEQQSLALDGRTFIKGVCLAVIFHNEETLYTVVRIRVEETNEAAAEEEVVVTGYFPRLNEGDVYIFYGQFRQHPRFGRQ
YAAEQFRKQLPNTKEGVIDYLSSGLFKGIGKKTATAIVDALGENAIAAILRDPGALERVPKLTKQKAKQLYETLCAHEGL
EQTMIALAQLGFGPQLAMKIYQVYGEETMDIIHENPYKLVEDIEGIGFGRADELGRQLGISGSHPARLRAACLFVLEQAC
LQEGHVYMKKEELVSRIGELLGGRSNGAVDGQAIEQTLLMLSEEGKMIAEQGRYYLPSLYFAEKGIASNIRRLLGQTPPS
ASFPESEFLLALGALEERLGMQYAPQQKEAIQRALSSPLFILTGGPGTGKTTVIKGIVELFAVLNGISLSPDDYKNGEPF
PVLLAAPTGRAAKRMSEATGLPAATIHRLLGWNGAEGFSHDENEPIAGKLLVVDEVSMVDTWLANHLLKAVPNGMQVIFV
GDEDQLPSVGPGQVLKDLLESGVIPSVRLTEVYRQAEGSSIIELAHEMKRGNVPADLTAPKADRSFIRCRAGQVASVVRQ
IAENARNKGFSVKDIQVLAPMYRGPAGIDQLNKVLQELFNPPTDGKRELSVGDVVYRVGDKVLQLVNQPEDNVFNGDIGE
VVAIFYAKENTEKQDLLVVSFDGIEVTYTRQDLAQITHAYCCSVHKAQGSEFPIVILPVVKSYYRMLKRNLLYTAVTRSK
QFLILCGEEEAFRFGVAQRGDGARQTALAEKLAASTALFVEGELPLEDANIGMENVTPYDFMDDGSS

Nucleotide

• Length: 2364 bp

>NTDB_id=201855 GTID1_RS15210 WP_008881020.1 3061241..3063604(+) (recD2) [Geobacillus thermodenitrificans strain ID-1]
TTGCAAGAGCAGCAATCGCTTGCGCTGGACGGCCGCACGTTTATTAAAGGGGTGTGTTTGGCCGTCATTTTTCATAACGA
GGAGACGTTGTATACCGTTGTCCGTATCCGCGTCGAAGAAACGAATGAAGCGGCTGCGGAGGAAGAAGTGGTCGTCACCG
GCTATTTTCCACGTTTAAATGAAGGGGACGTGTACATCTTTTACGGGCAATTCCGCCAACATCCGCGCTTTGGCCGCCAG
TATGCGGCCGAGCAGTTCCGCAAACAGCTTCCGAACACAAAAGAAGGAGTCATCGATTATTTGTCGAGCGGCTTGTTTAA
GGGGATCGGCAAAAAAACAGCGACAGCGATTGTCGATGCGCTTGGTGAAAACGCGATCGCCGCCATTTTGCGTGATCCAG
GGGCACTCGAACGTGTGCCCAAGCTGACGAAACAAAAAGCGAAGCAATTGTACGAAACGCTCTGCGCCCACGAAGGGCTC
GAGCAGACGATGATCGCCCTCGCTCAGCTCGGTTTTGGTCCACAGCTGGCAATGAAAATTTACCAAGTATACGGCGAAGA
GACAATGGACATCATTCATGAAAACCCGTACAAGCTCGTCGAAGATATTGAAGGGATCGGTTTTGGTCGCGCCGATGAGC
TCGGGCGGCAGCTCGGCATTTCCGGCAGTCATCCAGCCCGGCTGCGCGCCGCTTGTCTGTTTGTCCTTGAGCAGGCATGC
TTGCAAGAAGGACACGTCTACATGAAGAAAGAAGAGCTCGTCAGCCGCATTGGGGAGCTGCTTGGCGGAAGGTCGAACGG
GGCGGTTGATGGACAAGCTATCGAACAGACGCTCCTTATGTTAAGCGAAGAAGGAAAGATGATCGCGGAACAAGGCCGCT
ATTATCTTCCTTCGCTTTACTTCGCCGAAAAAGGGATCGCTTCTAACATTCGGCGGTTGCTCGGGCAAACGCCACCATCG
GCCTCATTTCCGGAGTCGGAGTTTTTGCTGGCGCTCGGGGCGCTTGAAGAACGACTCGGGATGCAATATGCTCCGCAGCA
AAAAGAAGCGATTCAACGGGCGCTGTCTTCGCCGCTCTTTATTTTGACGGGAGGTCCAGGAACAGGAAAAACAACGGTCA
TTAAAGGAATTGTTGAGCTGTTTGCGGTTCTAAATGGCATATCACTTTCCCCCGACGATTACAAAAACGGTGAACCGTTT
CCTGTGCTGCTCGCTGCTCCGACTGGACGGGCTGCAAAGCGGATGAGTGAGGCGACCGGGCTGCCGGCGGCGACGATTCA
CCGGCTGCTCGGCTGGAATGGAGCGGAAGGGTTCAGCCACGATGAAAATGAGCCGATTGCCGGTAAGCTGCTTGTCGTCG
ATGAGGTGTCGATGGTCGATACGTGGTTGGCTAATCACCTGTTAAAAGCGGTGCCTAATGGGATGCAAGTCATCTTCGTT
GGCGATGAAGACCAGCTTCCATCCGTCGGGCCAGGGCAAGTGTTGAAAGATTTGCTCGAGTCGGGTGTTATCCCGTCCGT
GCGGCTGACCGAGGTGTACCGCCAGGCGGAAGGGTCATCGATTATCGAGCTCGCCCATGAGATGAAGCGTGGGAACGTGC
CGGCCGACTTGACTGCCCCGAAGGCGGATCGTTCGTTCATCCGCTGCCGCGCCGGACAAGTGGCTAGTGTCGTGCGTCAA
ATCGCCGAAAATGCGCGTAACAAAGGGTTTTCCGTCAAAGACATTCAAGTGCTCGCTCCGATGTACCGCGGCCCAGCCGG
TATCGATCAGCTAAACAAAGTGCTGCAGGAGCTGTTTAATCCACCAACGGATGGGAAGCGAGAACTTTCCGTTGGCGACG
TAGTGTATCGCGTCGGCGATAAAGTGCTCCAGCTCGTCAATCAACCGGAAGACAACGTGTTTAACGGCGATATCGGTGAA
GTCGTGGCCATTTTTTATGCCAAAGAAAATACAGAAAAGCAAGATTTGCTCGTCGTCTCATTTGACGGCATTGAAGTGAC
GTATACAAGGCAAGATTTAGCGCAAATTACCCATGCATATTGCTGCTCCGTCCATAAGGCGCAAGGGAGCGAGTTTCCGA
TTGTCATTTTGCCTGTTGTCAAAAGTTATTACCGGATGTTGAAGCGGAATTTGTTGTATACGGCGGTGACAAGAAGCAAA
CAATTTCTGATTTTATGCGGGGAGGAAGAAGCATTCCGGTTTGGTGTTGCCCAGCGGGGCGACGGAGCGCGCCAGACGGC
GCTTGCAGAAAAGTTGGCGGCTTCGACTGCGCTGTTTGTCGAAGGGGAACTGCCGCTTGAGGATGCGAACATCGGGATGG
AAAACGTTACGCCGTATGACTTTATGGACGATGGGTCAAGCTAA

Domains

Predicted by InterproScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (591-661)

• AAA domain (AAA_30) (342-549)

• Helix-hairpin-helix containing domain (HHH_RecD2) (157-247)

• Helix-hairpin-helix domain (HHH_5) (107-153)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (678-726)

3D structure

• AlphaFold DB: A0A0Q0ZBY2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	59.925	100	0.606