Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   GTID1_RS15125 Genome accession   NZ_CP017690
Coordinates   3041665..3044022 (+) Length   785 a.a.
NCBI ID   WP_011887888.1    Uniprot ID   A0A0Q0YWP7
Organism   Geobacillus thermodenitrificans strain ID-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3036665..3049022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTID1_RS15110 (GTID1_14785) - 3037897..3038187 (+) 291 WP_008881041.1 post-transcriptional regulator -
  GTID1_RS15115 (GTID1_14790) secDF 3038307..3040559 (+) 2253 WP_099233321.1 protein translocase subunit SecDF -
  GTID1_RS15120 (GTID1_14795) - 3040705..3041607 (+) 903 WP_172437891.1 cation diffusion facilitator family transporter -
  GTID1_RS15125 (GTID1_14800) recJ 3041665..3044022 (+) 2358 WP_011887888.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  GTID1_RS15130 (GTID1_14805) - 3044022..3044534 (+) 513 WP_008881037.1 adenine phosphoribosyltransferase -
  GTID1_RS15135 (GTID1_14810) - 3044681..3046879 (+) 2199 WP_011887887.1 RelA/SpoT family protein -
  GTID1_RS15140 (GTID1_14815) dtd 3046902..3047360 (+) 459 WP_099233325.1 D-aminoacyl-tRNA deacylase -
  GTID1_RS19410 - 3047439..3047612 (+) 174 WP_008881034.1 hypothetical protein -
  GTID1_RS15145 (GTID1_14820) ahpC 3047970..3048533 (+) 564 WP_008881033.1 alkyl hydroperoxide reductase subunit C -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 86706.12 Da        Isoelectric Point: 5.1627

>NTDB_id=201854 GTID1_RS15125 WP_011887888.1 3041665..3044022(+) (recJ) [Geobacillus thermodenitrificans strain ID-1]
MLKAKTRWEVDCPDEQTVRRLAEEADIAPLLAKLLVRRGVRTAAEAAAFLDPLGQPFHDPFLLDGMERAVRRLERAINTG
ELVLVYGDYDADGVCSTSVMVSALKEAGASVEFYIPNRFTEGYGPNLAAFRAAKERGVSVIVTVDNGIAAVDEIAAANEW
GLDVIVTDHHEPGPVLPEAYAIIHPKKPGSTYPFRDLAGVGVAFKVAHALLGRVPRHLLDLVAIGTIADLVPLVGENRLL
AAQGLEALRETNRVGLRALWRQCRIDAMTVNEQTVGFAIAPRLNAAGRLGGADPAVALLMTDDEGEAARLAQEMDELNRE
RQQLVAQMAEEAAEMVRRQFPPEEHRVLVVAGEGWNPGVVGIVASKLVEQFYRPAVVLSMDREKGIAKGSARSIHGFDLF
ASLSQCRDILPHFGGHPMAAGMTLALDDVEELRERLNAIAARTLSDDDFTPPTFIDAACSVDELTLSAARSFERLAPFGV
SNPRPLLLIEEVAVETMRRVGANGAHMKAVFSQNGAAIDAIGFGLGPLCEEIAPGACVSAVGELSVNEWNGLAKPQLSLC
DVAVSSCQVFDVRGCRDVHPLIERMPKEKRLLVLFRRETENQLDLAAFRDELHYVASDEEAGALAIDGRYVVLLDLPPKL
RRLAALLGNGQPERIYAVFAQPEAQFFRTFPTRDHFKWFYAFLHKYRSFPLAERGGQLARARGWTEETVHFMAKVFLELE
FIREQDGVISLVHAPEKRDLHESPTYRRRRDELEVEQQLLYSTYEQLKRCLAEMTRSQTYEEANV

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=201854 GTID1_RS15125 WP_011887888.1 3041665..3044022(+) (recJ) [Geobacillus thermodenitrificans strain ID-1]
ATGTTAAAAGCGAAAACGCGTTGGGAAGTAGATTGCCCCGACGAACAGACGGTGAGGCGGCTGGCCGAGGAAGCCGACAT
CGCGCCGTTGTTAGCAAAGCTTCTTGTCCGCCGTGGCGTGCGGACGGCAGCGGAAGCGGCCGCGTTTCTTGATCCCCTTG
GACAGCCGTTTCATGATCCGTTTCTACTTGATGGGATGGAACGGGCGGTTCGGCGCTTAGAGCGGGCGATCAACACCGGC
GAACTTGTGCTTGTCTATGGCGACTATGATGCCGATGGCGTCTGCAGTACGTCGGTGATGGTGAGCGCCCTTAAAGAGGC
GGGAGCGTCGGTCGAATTCTACATTCCCAATCGCTTTACGGAAGGATACGGTCCGAATCTGGCGGCATTTCGTGCCGCGA
AAGAGCGGGGCGTGTCCGTTATTGTGACGGTCGACAATGGAATTGCAGCGGTCGATGAAATCGCTGCCGCTAATGAGTGG
GGGCTTGATGTCATTGTGACCGACCACCATGAACCGGGTCCGGTGTTACCGGAGGCGTACGCGATCATTCATCCGAAAAA
GCCGGGAAGTACATACCCGTTTCGCGATTTGGCCGGCGTCGGCGTCGCATTTAAAGTTGCTCATGCGTTGCTTGGACGGG
TGCCGCGCCATTTGCTTGATTTGGTAGCGATCGGGACGATTGCCGACTTAGTGCCGCTCGTTGGGGAAAACCGTCTGCTC
GCCGCACAAGGGCTCGAGGCGCTGCGCGAAACGAACCGCGTTGGGTTGCGCGCCCTTTGGCGGCAATGCCGTATTGATGC
GATGACAGTAAATGAACAGACGGTCGGTTTTGCTATCGCGCCGCGGCTGAATGCGGCCGGCCGCCTCGGCGGCGCCGATC
CGGCCGTGGCGCTGTTAATGACAGACGATGAGGGCGAAGCCGCACGGTTGGCCCAAGAAATGGATGAACTAAACCGTGAA
CGCCAGCAGCTTGTGGCGCAAATGGCTGAAGAAGCGGCAGAGATGGTACGGCGTCAGTTTCCGCCTGAAGAGCATCGCGT
TCTTGTTGTCGCGGGTGAAGGATGGAATCCGGGGGTTGTTGGCATCGTTGCCTCGAAACTTGTTGAGCAGTTTTATCGTC
CAGCGGTTGTGCTTTCGATGGATCGGGAAAAAGGAATCGCCAAAGGGTCGGCTCGCAGCATTCACGGCTTTGACCTCTTT
GCAAGTTTATCGCAATGTCGTGACATTTTGCCTCATTTTGGTGGCCATCCGATGGCGGCGGGAATGACCTTAGCGCTTGA
TGATGTCGAAGAACTACGGGAGCGGTTGAATGCCATCGCCGCTAGGACGTTGTCAGATGATGATTTTACACCGCCGACGT
TTATTGATGCTGCCTGCTCTGTTGATGAGCTGACGTTGTCGGCCGCGCGCAGCTTTGAGCGGCTTGCCCCGTTTGGTGTC
AGCAATCCGCGGCCGCTTCTTCTTATTGAAGAGGTGGCGGTTGAAACGATGCGCCGCGTCGGAGCGAACGGCGCCCATAT
GAAAGCGGTCTTTTCCCAAAATGGTGCAGCGATTGATGCCATTGGCTTCGGTCTCGGGCCGCTTTGCGAGGAGATCGCCC
CTGGGGCGTGCGTCTCGGCCGTCGGAGAGCTTTCGGTAAATGAATGGAACGGGTTAGCGAAGCCGCAGTTGTCGTTATGT
GATGTAGCGGTAAGCAGCTGCCAAGTGTTTGATGTCCGCGGCTGCCGCGATGTCCACCCGCTTATTGAGCGAATGCCGAA
AGAGAAACGGCTGCTTGTCCTGTTTCGCCGCGAAACCGAAAATCAATTAGATTTGGCGGCGTTTCGCGACGAACTTCATT
ATGTAGCAAGTGATGAAGAGGCGGGCGCCTTGGCGATTGACGGCCGCTATGTCGTGCTGCTTGACTTGCCGCCAAAGCTC
CGCCGACTCGCTGCCTTGCTTGGCAACGGGCAGCCGGAGCGCATTTACGCGGTGTTTGCGCAGCCGGAAGCGCAGTTTTT
TCGCACGTTTCCGACGCGCGACCATTTTAAATGGTTTTATGCCTTTTTGCATAAATACCGTTCGTTTCCGCTCGCCGAGC
GGGGCGGACAGCTGGCGCGCGCCCGTGGCTGGACGGAAGAGACGGTTCATTTTATGGCGAAAGTATTTTTAGAGCTTGAG
TTTATTCGCGAACAAGACGGCGTCATCTCACTTGTCCATGCGCCAGAGAAGCGTGATTTGCATGAATCACCGACATATCG
CCGCCGGCGGGACGAGCTTGAGGTGGAACAGCAGTTATTATATTCCACTTATGAGCAGTTGAAACGCTGTTTAGCAGAAA
TGACACGTTCGCAAACGTACGAGGAGGCAAACGTATAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(83-226)

RecJ OB domain (RecJ_OB)

(455-560)

DHHA1 domain (DHHA1)

(311-439)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-771)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q0YWP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

53.257

99.745

0.531

Multiple sequence alignment