Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BKN48_RS18740 Genome accession   NZ_CP017676
Coordinates   3569483..3570262 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain VV2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3564483..3575262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKN48_RS18720 (BKN48_18720) trmFO 3565176..3566483 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BKN48_RS18725 (BKN48_18725) xerC 3566551..3567465 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  BKN48_RS18730 (BKN48_18730) clpQ 3567478..3568023 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  BKN48_RS18735 (BKN48_18735) hslU 3568040..3569443 (+) 1404 WP_014476801.1 HslU--HslV peptidase ATPase subunit -
  BKN48_RS18740 (BKN48_18740) codY 3569483..3570262 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BKN48_RS18745 (BKN48_18745) flgB 3570642..3571031 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  BKN48_RS18750 (BKN48_18750) flgC 3571031..3571483 (+) 453 WP_021479294.1 flagellar basal body rod protein FlgC -
  BKN48_RS18755 (BKN48_18755) fliE 3571494..3571814 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  BKN48_RS18760 (BKN48_18760) fliF 3571860..3573470 (+) 1611 WP_080481271.1 flagellar basal-body MS-ring/collar protein FliF -
  BKN48_RS18765 (BKN48_18765) fliG 3573483..3574499 (+) 1017 WP_014663967.1 flagellar motor switch protein FliG -
  BKN48_RS18770 (BKN48_18770) fliH 3574492..3575244 (+) 753 WP_041521507.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=201531 BKN48_RS18740 WP_003220850.1 3569483..3570262(+) (codY) [Bacillus subtilis strain VV2]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=201531 BKN48_RS18740 WP_003220850.1 3569483..3570262(+) (codY) [Bacillus subtilis strain VV2]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCAGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAGTATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGCGAATATACTGCTTTCCCTGTTGAGAACAGAGATCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACGGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTGCTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment