Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   BKM67_RS06915 Genome accession   NZ_CP017667
Coordinates   1386628..1387467 (-) Length   279 a.a.
NCBI ID   WP_044676739.1    Uniprot ID   -
Organism   Streptococcus suis strain 1081     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1381628..1392467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM67_RS06900 (BKM67_06745) uidA 1381985..1383784 (-) 1800 WP_105183924.1 beta-glucuronidase -
  BKM67_RS06905 (BKM67_06750) - 1383804..1384832 (-) 1029 WP_105183925.1 sugar kinase -
  BKM67_RS06910 (BKM67_06755) - 1384888..1386441 (-) 1554 WP_105120462.1 MFS transporter -
  BKM67_RS06915 (BKM67_06760) endA 1386628..1387467 (-) 840 WP_044676739.1 DNA/RNA non-specific endonuclease Machinery gene
  BKM67_RS06920 (BKM67_06765) - 1387497..1387688 (-) 192 WP_012775177.1 DNA-directed RNA polymerase subunit beta -
  BKM67_RS06925 (BKM67_06770) murA 1387681..1388964 (-) 1284 WP_024413088.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  BKM67_RS06930 (BKM67_06775) - 1388988..1389212 (-) 225 WP_024387485.1 DUF1146 family protein -
  BKM67_RS06935 (BKM67_06780) - 1389272..1389688 (-) 417 WP_002936007.1 F0F1 ATP synthase subunit epsilon -
  BKM67_RS06940 (BKM67_06785) atpD 1389698..1391104 (-) 1407 WP_105183926.1 F0F1 ATP synthase subunit beta -
  BKM67_RS06945 (BKM67_06790) - 1391124..1392002 (-) 879 WP_105183927.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30205.38 Da        Isoelectric Point: 6.2370

>NTDB_id=201358 BKM67_RS06915 WP_044676739.1 1386628..1387467(-) (endA) [Streptococcus suis strain 1081]
MAKKNVRKQAMSLLSLLATIVVVAGGYLLSDNKSSNIADYSYYVNQSKASESTPSQELASSVLTEDVKKQLGNSIEWNGA
GAFIINGNQTDLDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREETGNGRTSWTPAGWHQIHDLTGEYDHA
VDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRVRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEIAVNQ

Nucleotide


Download         Length: 840 bp        

>NTDB_id=201358 BKM67_RS06915 WP_044676739.1 1386628..1387467(-) (endA) [Streptococcus suis strain 1081]
ATGGCGAAGAAAAATGTAAGAAAACAAGCAATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTCGTAGCGGGTGGCTA
TCTTTTAAGTGATAACAAGAGCAGTAACATTGCTGATTATTCCTATTATGTCAATCAGTCTAAGGCAAGCGAGAGCACAC
CTAGTCAGGAACTGGCTAGTTCGGTATTGACAGAAGATGTAAAAAAGCAACTGGGGAATTCGATTGAATGGAATGGTGCT
GGAGCATTTATTATTAACGGTAATCAAACGGATTTAGATGCATCGGTTGCCAGTGTTCCTTATGGTGATAATAAGACAAA
GACAGTCCAGGGAGAAACGGTTCCAACAGTAGCCAATGCGCTTTTAGCCAAATCTACACGTCAGTATAAGGACCGTGAAG
AAACAGGAAATGGTCGGACTTCTTGGACACCTGCGGGTTGGCATCAGATCCATGATTTAACTGGAGAATATGACCATGCA
GTGGACCGTGGGCACCTCCTAGGTTATGCTTTGATTGGTGGATTGTCTGGTTTCGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAACCAAGCTAATGACCAAACTTCAACTGGGCAGAATTATTTTGAAAGTCAGATTC
GGCGGGCCTTGGATAAAAATAAGCGTGTCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTC
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGCCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGTGGTCTCAG
TATCAACTATCATAGTGGGGAAATTGCAGTAAATCAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

70.339

84.588

0.595
  endA Streptococcus pneumoniae D39

70.339

84.588

0.595
  endA Streptococcus pneumoniae R6

70.339

84.588

0.595
  endA Streptococcus pneumoniae TIGR4

70.339

84.588

0.595

Multiple sequence alignment