Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   CGU45_RS26010 Genome accession   NZ_CP022526
Coordinates   5432110..5433168 (+) Length   352 a.a.
NCBI ID   WP_003086123.1    Uniprot ID   Q02IC9
Organism   Pseudomonas aeruginosa strain Ocean-1155     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5427110..5438168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGU45_RS25985 (CGU45_25985) - 5427371..5427841 (-) 471 WP_003086103.1 Dps family protein -
  CGU45_RS25990 (CGU45_25990) aspS 5428281..5430056 (+) 1776 WP_003123218.1 aspartate--tRNA ligase -
  CGU45_RS25995 (CGU45_25995) - 5430123..5430869 (+) 747 WP_003086107.1 YebC/PmpR family DNA-binding transcriptional regulator -
  CGU45_RS26000 (CGU45_26000) ruvC 5430954..5431477 (+) 524 Protein_5031 crossover junction endodeoxyribonuclease RuvC -
  CGU45_RS26005 (CGU45_26005) ruvA 5431494..5432099 (+) 606 WP_003086122.1 Holliday junction branch migration protein RuvA -
  CGU45_RS26010 (CGU45_26010) ruvB 5432110..5433168 (+) 1059 WP_003086123.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  CGU45_RS26015 (CGU45_26015) ybgC 5433221..5433667 (+) 447 WP_003086124.1 tol-pal system-associated acyl-CoA thioesterase -
  CGU45_RS26020 (CGU45_26020) tolQ 5433669..5434364 (+) 696 WP_003086125.1 protein TolQ -
  CGU45_RS26025 (CGU45_26025) tolR 5434387..5434827 (+) 441 WP_003086126.1 protein TolR -
  CGU45_RS26030 (CGU45_26030) tolA 5434830..5435873 (+) 1044 WP_003086127.1 cell envelope integrity protein TolA -
  CGU45_RS26035 (CGU45_26035) tolB 5435870..5437168 (+) 1299 WP_003086128.1 Tol-Pal system beta propeller repeat protein TolB -
  CGU45_RS26040 (CGU45_26040) pal 5437221..5437727 (+) 507 WP_003111417.1 peptidoglycan-associated lipoprotein Pal -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38932.67 Da        Isoelectric Point: 5.1792

>NTDB_id=201358 CGU45_RS26010 WP_003086123.1 5432110..5433168(+) (ruvB) [Pseudomonas aeruginosa strain Ocean-1155]
MIEPDRLISAVSGRERDEQLDRAIRPLKLADYIGQPSVREQMELFIHAARGRQEALDHTLIFGPPGLGKTTLANIIAQEM
GVSIKSTSGPVLERPGDLAALLTNLEAGDVLFVDEIHRLSPIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVG
ATTRAGMLTNPLRDRFGIVQRLEFYNVEDLATIVSRSAGILGLEIEPQGAAEIAKRARGTPRIANRLLRRVRDFAEVRGQ
GDITRVIADKALNLLDVDERGFDHLDRRLLLTMIDKFDGGPVGIDNLAAALSEERHTIEDVLEPYLIQQGYIMRTPRGRV
VTRHAYLHFGLNIPKRLGPGVTTDLFTSEDGN

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=201358 CGU45_RS26010 WP_003086123.1 5432110..5433168(+) (ruvB) [Pseudomonas aeruginosa strain Ocean-1155]
ATGATCGAGCCTGATCGCCTCATATCCGCCGTTTCCGGTCGCGAACGCGATGAGCAGCTGGACCGCGCCATTCGCCCGCT
GAAGCTGGCCGACTACATCGGCCAGCCCAGCGTGCGCGAGCAGATGGAGCTGTTCATCCATGCCGCGCGCGGCCGCCAGG
AGGCGCTCGACCATACGCTGATCTTCGGTCCGCCGGGGTTGGGCAAGACGACCCTGGCGAATATCATCGCCCAGGAAATG
GGCGTTTCCATCAAGAGTACTTCCGGGCCGGTGCTCGAGCGTCCCGGCGATCTCGCCGCGTTGCTGACCAACCTGGAGGC
CGGCGACGTCCTGTTCGTCGACGAGATCCACCGTCTTTCGCCCATCGTCGAAGAAGTGCTGTATCCGGCCATGGAAGATT
TCCAGTTGGACATCATGATCGGCGAAGGGCCCGCGGCCCGCTCCATCAAGCTGGACCTGCCGCCGTTCACCCTGGTCGGC
GCGACCACTCGTGCCGGCATGCTGACCAATCCACTGCGCGATCGCTTCGGTATCGTCCAGCGCCTGGAGTTCTACAACGT
CGAGGACCTGGCGACCATCGTCAGTCGGTCGGCCGGCATTCTCGGCCTGGAGATCGAGCCGCAGGGCGCGGCGGAAATCG
CCAAGCGCGCCCGCGGTACGCCGCGAATCGCCAATCGCCTGCTGCGCCGGGTACGCGACTTCGCCGAGGTCCGGGGGCAG
GGCGACATTACCCGGGTGATCGCCGACAAGGCATTGAACCTGCTCGATGTCGACGAGCGTGGCTTTGACCACCTCGACCG
TCGTCTGTTGCTGACCATGATCGACAAGTTCGATGGCGGGCCTGTAGGAATCGACAACTTGGCTGCGGCGTTGAGCGAGG
AGCGGCACACGATCGAAGATGTACTGGAGCCCTATCTGATCCAGCAGGGCTACATCATGCGGACACCGCGGGGACGCGTG
GTAACACGCCATGCGTACCTGCACTTTGGCCTGAATATTCCGAAAAGGTTGGGGCCGGGGGTGACGACGGATCTGTTCAC
GTCTGAAGATGGTAATTAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-329)

RuvB AAA lid domain (AAA_lid_4)

(185-258)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(24-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02IC9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

61.027

94.034

0.574
  ruvB Streptococcus pneumoniae TIGR4

59.062

90.909

0.537
  ruvB Streptococcus pneumoniae R6

58.75

90.909

0.534
  ruvB Streptococcus pneumoniae D39

58.75

90.909

0.534
  ruvB Synechocystis sp. PCC 6803

57.143

91.477

0.523
  ruvB Helicobacter pylori 26695

55.449

88.636

0.491

Multiple sequence alignment