Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SSU05_0350 Genome accession   CP000407
Coordinates   338756..339544 (+) Length   262 a.a.
NCBI ID   ABP89317.1    Uniprot ID   -
Organism   Streptococcus suis 05ZYH33     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 333756..344544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU05_0344 - 334117..334443 (-) 327 ABP89311.1 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D -
  SSU05_0345 - 334650..335075 (-) 426 ABP89312.1 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D -
  SSU05_0346 - 335136..335990 (+) 855 ABP89313.1 Predicted hydrolase of the HAD superfamily -
  SSU05_0347 - 335980..336510 (+) 531 ABP89314.1 Uncharacterized protein conserved in bacteria -
  SSU05_0348 - 336560..336988 (-) 429 ABP89315.1 Universal stress protein UspA and related nucleotide-binding protein -
  SSU05_0349 - 337133..338347 (+) 1215 ABP89316.1 Aspartate/tyrosine/aromatic aminotransferase -
  SSU05_0350 codY 338756..339544 (+) 789 ABP89317.1 Pleiotropic transcriptional repressor Regulator
  SSU05_0351 - 339578..340021 (+) 444 ABP89318.1 Amidases related to nicotinamidase -
  SSU05_0352 - 340342..340689 (+) 348 ABP89319.1 50S ribosomal protein L19 -
  SSU05_0353 - 340844..341524 (+) 681 ABP89320.1 hypothetical protein -
  SSU05_0354 - 341741..342043 (+) 303 ABP89321.1 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit -
  SSU05_0355 - 342043..343509 (+) 1467 ABP89322.1 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29307.34 Da        Isoelectric Point: 4.6190

>NTDB_id=20135 SSU05_0350 ABP89317.1 338756..339544(+) (codY) [Streptococcus suis 05ZYH33]
MTTLLEKTRNITSILKRSEEQLAEELPYNAIAEHLSAIIDCNSCIINSEGEVLGYHMSYETNNDRVEEFFQNKQFPEGYV
KAVAQVYDTQVNLPVESELTAIPVESRSTYPNGLTTIAPIHVTGIRFGSLIIWRNDEQFHDDDLILVEIAATVVGIQLLN
FQREEDEKNIRRRAAVNMAVNTLSYSEMKAVAAILGELDGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPAIFDEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=20135 SSU05_0350 ABP89317.1 338756..339544(+) (codY) [Streptococcus suis 05ZYH33]
ATGACAACATTATTAGAGAAGACACGGAATATTACTTCTATTTTGAAGCGTTCCGAAGAGCAATTGGCAGAAGAATTGCC
TTACAATGCTATTGCTGAACATCTATCAGCTATTATTGATTGCAATTCTTGTATTATTAATAGCGAAGGTGAAGTTTTGG
GATACCACATGAGTTACGAGACAAACAATGATCGTGTGGAAGAATTTTTCCAAAACAAACAATTCCCAGAAGGATATGTA
AAAGCAGTTGCGCAGGTTTACGATACGCAGGTTAATTTGCCTGTCGAGAGCGAGTTGACTGCCATCCCTGTCGAATCACG
CTCGACTTATCCAAACGGGCTGACAACGATAGCGCCTATCCACGTAACGGGGATTCGTTTTGGTTCGCTTATTATTTGGC
GGAATGATGAGCAGTTTCACGATGATGATTTGATTTTGGTTGAGATTGCGGCAACAGTAGTTGGTATTCAGTTACTTAAT
TTCCAACGGGAAGAAGACGAGAAGAATATCCGTCGTCGTGCGGCAGTTAATATGGCGGTAAATACGCTATCTTACTCAGA
AATGAAGGCAGTTGCAGCTATTTTGGGTGAATTGGATGGCAATGAGGGGCAATTGACTGCTTCTGTGATTGCAGATCGTA
TCGGTATTACACGATCGGTGATTGTGAATGCACTGCGTAAGTTGGAGAGTGCAGGGATTATTGAAAGTCGTTCTTTGGGA
ATGAAGGGGACTTATTTGAAAGTTCTCATCCCAGCTATTTTTGATGAAATTAAGAAACGTGACTACTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

59.16

100

0.592
  codY Bacillus subtilis subsp. subtilis str. 168

52.439

93.893

0.492

Multiple sequence alignment