Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   CG450_RS13795 Genome accession   NZ_CP022477
Coordinates   2618577..2619026 (-) Length   149 a.a.
NCBI ID   WP_003181503.1    Uniprot ID   Q65K02
Organism   Bacillus licheniformis strain BL-010     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2613577..2624026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG450_RS13770 - 2614312..2615334 (-) 1023 WP_080618631.1 SepM family pheromone-processing serine protease -
  CG450_RS13775 ylbJ 2615658..2616878 (+) 1221 WP_003181511.1 sporulation integral membrane protein YlbJ -
  CG450_RS13780 coaD 2616887..2617381 (-) 495 WP_003181508.1 pantetheine-phosphate adenylyltransferase -
  CG450_RS13785 rsmD 2617374..2617940 (-) 567 WP_003181507.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  CG450_RS23205 - 2617989..2618123 (-) 135 WP_254926361.1 hypothetical protein -
  CG450_RS13790 - 2618233..2618505 (-) 273 WP_009328559.1 YlbG family protein -
  CG450_RS13795 ylbF 2618577..2619026 (-) 450 WP_003181503.1 YlbF family regulator Regulator
  CG450_RS13800 - 2619304..2619543 (-) 240 WP_003181501.1 YlbE-like family protein -
  CG450_RS13805 - 2619558..2619953 (-) 396 WP_094023900.1 YlbD family protein -
  CG450_RS13810 - 2620107..2621150 (-) 1044 WP_061578496.1 CAP domain-containing protein -
  CG450_RS13815 - 2621291..2621737 (-) 447 WP_003181494.1 CBS domain-containing protein -
  CG450_RS13820 - 2621905..2622264 (+) 360 WP_003181492.1 YugN family protein -
  CG450_RS13825 ctaG 2622321..2623220 (-) 900 WP_011197954.1 cytochrome c oxidase assembly factor CtaG -
  CG450_RS13830 ctaF 2623254..2623583 (-) 330 WP_003181487.1 cytochrome c oxidase subunit IVB -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16903.11 Da        Isoelectric Point: 6.3347

>NTDB_id=201013 CG450_RS13795 WP_003181503.1 2618577..2619026(-) (ylbF) [Bacillus licheniformis strain BL-010]
MFATMESLRLQNEAYDLANMILQSEAAEHYRKCYKRLREDEEAGRIIASFTKIKEQYEDVQRFGKYHPDYKEISKKMREI
KRELDLHDTVAEFKKAETELQSILDEVSVEIGHAVSKHIKVPTGNPYFDNLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=201013 CG450_RS13795 WP_003181503.1 2618577..2619026(-) (ylbF) [Bacillus licheniformis strain BL-010]
ATGTTTGCCACAATGGAATCGTTGCGGCTTCAAAATGAAGCATATGATTTGGCCAACATGATTCTTCAATCAGAGGCGGC
TGAACATTACAGAAAATGCTATAAGCGTCTCCGCGAAGATGAAGAGGCCGGACGTATTATCGCTTCGTTTACGAAAATAA
AAGAACAGTACGAGGATGTGCAGCGCTTTGGCAAGTATCATCCTGATTATAAAGAGATATCCAAGAAAATGAGGGAAATC
AAACGGGAGCTTGACCTTCACGATACAGTAGCCGAATTTAAAAAGGCGGAAACCGAGCTGCAATCCATTCTTGATGAAGT
CAGCGTGGAAATCGGTCATGCTGTGTCAAAACATATCAAAGTACCGACTGGAAACCCTTATTTTGATAATCTTTCATCTT
GCGGCGGCGGCTGCGGGTCAGGCGGAAGCTGCGGCTGTAAAGTTTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65K02

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

84.564

100

0.846

Multiple sequence alignment