Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   SSU05_1168 Genome accession   CP000407
Coordinates   1114288..1115127 (-) Length   279 a.a.
NCBI ID   ABP90134.1    Uniprot ID   -
Organism   Streptococcus suis 05ZYH33     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1109288..1120127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU05_1163 - 1109649..1111448 (-) 1800 ABP90129.1 Beta-galactosidase/beta-glucuronidase -
  SSU05_1164 - 1111464..1112531 (-) 1068 ABP90130.1 Sugar kinase, ribokinase family -
  SSU05_1165 - 1112548..1112733 (-) 186 ABP90131.1 sugar transporter, putative -
  SSU05_1166 - 1112724..1113323 (-) 600 ABP90132.1 Unknown protein -
  SSU05_1167 - 1113262..1114101 (-) 840 ABP90133.1 Unknown protein -
  SSU05_1168 endA 1114288..1115127 (-) 840 ABP90134.1 hypothetical protein Machinery gene
  SSU05_1169 - 1115157..1115363 (-) 207 ABP90135.1 hypothetical protein -
  SSU05_1170 - 1115341..1116624 (-) 1284 ABP90136.1 UDP-N-acetylglucosamine enolpyruvyl transferase -
  SSU05_1171 - 1116932..1117348 (-) 417 ABP90137.1 F0F1-type ATP synthase, epsilon subunit -
  SSU05_1172 - 1117358..1118803 (-) 1446 ABP90138.1 F0F1-type ATP synthase, beta subunit -
  SSU05_1173 - 1118784..1119662 (-) 879 ABP90139.1 F0F1-type ATP synthase, gamma subunit -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30307.02 Da        Isoelectric Point: 8.2997

>NTDB_id=20091 SSU05_1168 ABP90134.1 1114288..1115127(-) (endA) [Streptococcus suis 05ZYH33]
MAKKNVKKQAMSLLSLLATIVVVAGGYLLSDNKSSNVADYSYYVNQSKASEGTPNQELASSVLTEDVKKQLGNSIEWNSA
GAFIINGNQTDLDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREETGNGRTSWTPAGWHQIHDLTGEYDHA
VDRGHLLGYALIGGLSGFDASTSNPKILQFKQLGPTKLTTKLQLGRIIFESQMRRALDKNKRVRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEIAVNQ

Nucleotide


Download         Length: 840 bp        

>NTDB_id=20091 SSU05_1168 ABP90134.1 1114288..1115127(-) (endA) [Streptococcus suis 05ZYH33]
ATGGCGAAGAAAAATGTAAAAAAACAAGCAATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTAGTAGCGGGTGGCTA
TCTTTTAAGTGATAACAAGAGTAGCAACGTTGCTGATTATTCCTATTATGTCAATCAGTCTAAGGCAAGTGAAGGCACAC
CTAATCAGGAACTGGCTAGTTCGGTATTGACAGAAGATGTAAAAAAGCAACTGGGAAATTCGATTGAATGGAATAGTGCT
GGAGCGTTTATTATTAACGGGAATCAAACGGATTTAGATGCATCGGTTGCCAGTGTTCCTTATGGTGATAATAAGACAAA
AACAGTCCAGGGAGAAACGGTTCCAACAGTAGCCAATGCGCTTTTAGCTAAATCTACACGTCAGTATAAGGATCGTGAAG
AAACAGGAAATGGTCGAACTTCTTGGACACCTGCGGGTTGGCATCAGATCCATGATTTAACTGGAGAATATGACCATGCA
GTGGACCGTGGTCACCTCCTAGGTTATGCTTTGATTGGTGGATTGTCTGGCTTCGATGCTTCAACCAGCAATCCTAAGAT
ATTGCAGTTCAAACAGCTTGGTCCAACCAAGCTAACGACCAAACTTCAACTGGGCAGAATTATTTTTGAAAGTCAGATGC
GGCGGGCCTTGGATAAAAATAAGCGTGTCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTC
GGAAGTCATCTAGAGGCAAAAGCAGCAGATGGTAGCCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGTGGTCTCAG
TATCAACTATCATAGTGGGGAAATTGCAGTAAATCAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

62.712

84.588

0.53
  endA Streptococcus pneumoniae D39

62.712

84.588

0.53
  endA Streptococcus pneumoniae R6

62.712

84.588

0.53
  endA Streptococcus pneumoniae TIGR4

62.712

84.588

0.53

Multiple sequence alignment