Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SSU05_0800 Genome accession   CP000407
Coordinates   777777..778742 (+) Length   321 a.a.
NCBI ID   ABP89766.1    Uniprot ID   -
Organism   Streptococcus suis 05ZYH33     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 772777..783742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU05_0793 - 772778..773539 (+) 762 ABP89759.1 SAM-dependent methyltransferase -
  SSU05_0794 - 773536..774183 (+) 648 ABP89760.1 Pyrrolidone-carboxylate peptidase -
  SSU05_0795 - 774183..774491 (+) 309 ABP89761.1 hypothetical protein -
  SSU05_0796 - 774555..774887 (+) 333 ABP89762.1 30S ribosomal protein S16 -
  SSU05_0797 - 774909..775151 (+) 243 ABP89763.1 Predicted RNA-binding protein (contains KH domain) -
  SSU05_0798 - 775179..776963 (+) 1785 ABP89764.1 putative ABC transporter, ATP-binding protein -
  SSU05_0799 - 776972..777838 (+) 867 ABP89765.1 ABC-type multidrug transport system, ATPase and permease component -
  SSU05_0800 rcrQ 777777..778742 (+) 966 ABP89766.1 ABC-type multidrug transport system, ATPase and permease component Regulator
  SSU05_0802 - 778799..779722 (-) 924 ABP89767.1 Predicted xylanase/chitin deacetylase -
  SSU05_0801 - 779647..781113 (+) 1467 ABP89768.1 Homoserine dehydrogenase -
  SSU05_0803 - 781117..781977 (+) 861 ABP89769.1 Homoserine kinase -
  SSU05_0804 - 782212..783120 (+) 909 ABP89770.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 321 a.a.        Molecular weight: 35682.68 Da        Isoelectric Point: 4.6220

>NTDB_id=20085 SSU05_0800 ABP89766.1 777777..778742(+) (rcrQ) [Streptococcus suis 05ZYH33]
MLSSPCYLALKVLAGTLTVGNMQAFVQYVWQISQPVQTLTQLAPQLQSAKSSLERIFSVLDELDEEDANALELTAGLTGQ
VSFEQVEFGYSEDKPLIRNFNLDVKPGEMVAIVGPTGAGKTTLINLLMRFYDVTSGAIKVDGQDIQNLSRQSYRSQFGMV
LQDAWLYEGTIKENLRFGRLDATDEEIVEAAKAANVDHFIRTLPGGYNMEMNQESSNISQGQKQLLTIARALLADPAILI
LDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQIIEQGNHESLLADKGFYYNLYQSQFSES
K

Nucleotide


Download         Length: 966 bp        

>NTDB_id=20085 SSU05_0800 ABP89766.1 777777..778742(+) (rcrQ) [Streptococcus suis 05ZYH33]
ATGTTGTCGTCGCCCTGCTATCTGGCATTGAAAGTTCTTGCAGGTACATTGACGGTGGGTAATATGCAGGCCTTCGTCCA
ATACGTCTGGCAGATTTCTCAGCCAGTCCAAACCTTGACCCAGTTGGCACCACAGTTACAGTCTGCCAAATCTTCCCTTG
AACGCATCTTTTCAGTCCTAGATGAGCTTGATGAAGAAGACGCCAATGCGCTGGAGTTGACAGCTGGTTTGACCGGACAA
GTCAGCTTTGAACAGGTCGAATTTGGCTATTCAGAAGACAAGCCGCTTATCCGTAACTTTAATCTTGATGTTAAGCCAGG
TGAAATGGTTGCTATCGTTGGTCCAACAGGGGCAGGTAAGACAACCCTTATCAACTTGCTCATGCGTTTCTATGATGTCA
CATCAGGTGCTATCAAGGTAGATGGGCAGGATATTCAAAATCTTTCACGTCAATCCTACCGTAGTCAATTTGGTATGGTC
TTGCAGGATGCTTGGCTCTATGAAGGGACCATCAAGGAAAACCTACGTTTTGGACGTCTGGATGCGACGGATGAGGAAAT
TGTGGAGGCTGCTAAAGCTGCCAACGTTGACCACTTTATCCGTACCCTGCCTGGCGGTTATAATATGGAAATGAACCAGG
AATCCAGCAATATTTCCCAAGGTCAGAAACAGCTTTTGACCATTGCACGTGCCTTGTTGGCGGATCCTGCTATTCTGATT
CTTGACGAAGCGACTTCTTCAGTTGATACCCGTTTGGAACTCTTGATTCAAAAGGCCATGAAACGGTTGATGAAAGGGCG
GACAAGTTTCGTCATCGCTCATCGCTTATCTACCATTCAGGAAGCTGATAAGATTTTGGTCTTGAAAGATGGACAGATTA
TCGAACAAGGTAACCATGAAAGTCTTTTGGCAGACAAAGGTTTCTATTATAATCTTTATCAAAGCCAGTTTAGTGAATCC
AAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(98-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.114

98.442

0.533

Multiple sequence alignment