Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   BJD94_RS11640 Genome accession   NZ_CP017635
Coordinates   2293304..2294014 (+) Length   236 a.a.
NCBI ID   WP_038969868.1    Uniprot ID   -
Organism   Vibrio vulnificus Env1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2288304..2299014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJD94_RS11620 (BJD94_10390) greB 2288582..2289064 (-) 483 WP_011078926.1 transcription elongation factor GreB -
  BJD94_RS11625 (BJD94_10395) - 2289300..2291624 (+) 2325 WP_038969870.1 Tex family protein -
  BJD94_RS11630 (BJD94_10400) - 2291840..2292310 (-) 471 WP_038941661.1 hypothetical protein -
  BJD94_RS11635 (BJD94_10405) bioH 2292448..2293215 (-) 768 WP_038969869.1 pimeloyl-ACP methyl ester esterase BioH -
  BJD94_RS11640 (BJD94_10410) comF 2293304..2294014 (+) 711 WP_038969868.1 ComF family protein Machinery gene
  BJD94_RS11645 (BJD94_10415) nfuA 2294145..2294729 (+) 585 WP_026050270.1 Fe-S biogenesis protein NfuA -
  BJD94_RS11650 (BJD94_10420) nudE 2294845..2295399 (+) 555 WP_011078932.1 ADP compounds hydrolase NudE -
  BJD94_RS11655 (BJD94_10425) cysQ 2295414..2296241 (+) 828 WP_017420493.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  BJD94_RS11660 (BJD94_10430) - 2296359..2297120 (-) 762 WP_038969867.1 type II secretion system protein N -
  BJD94_RS11665 (BJD94_10435) - 2297122..2297613 (-) 492 WP_038941658.1 type II secretion system protein M -
  BJD94_RS11670 (BJD94_10440) gspL 2297621..2298820 (-) 1200 WP_038969866.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27281.03 Da        Isoelectric Point: 9.6759

>NTDB_id=200814 BJD94_RS11640 WP_038969868.1 2293304..2294014(+) (comF) [Vibrio vulnificus Env1]
MLTDWLSEKILRSLPRLCHLCGLPMNHDHHPLWCRQCLTLFDAEPRCQRCGLPTLTVVPQCGQCLKSPPPWQRLYCLTPY
RFPASHYVNQIKHQRKFWYCASLAPLLIQRIDHPAPLLLSVPMHWRRQWQRGFNQSDVLAAQLARRLNRPFLAHAFTRLL
HTPPQQGLNKQQRQRNLAGAFRLNRSALPHAIPKHVAIVDDVVTTGCTVRQLCQLLLAVGVESIDIYCLCRTPEKD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=200814 BJD94_RS11640 WP_038969868.1 2293304..2294014(+) (comF) [Vibrio vulnificus Env1]
ATGTTAACCGATTGGCTTAGTGAAAAAATACTCCGATCTCTTCCTCGCCTCTGTCATCTGTGCGGCTTGCCGATGAATCA
CGACCACCACCCGCTCTGGTGCCGGCAATGCCTAACCCTGTTCGATGCCGAACCGCGTTGCCAACGTTGCGGGCTGCCGA
CGTTAACGGTTGTCCCCCAATGCGGCCAATGTCTGAAATCTCCGCCCCCTTGGCAAAGGCTTTACTGCCTCACGCCGTAT
CGCTTCCCGGCCTCACACTACGTCAATCAAATCAAACATCAGCGCAAGTTCTGGTACTGCGCCAGCTTGGCTCCTTTGCT
CATCCAACGCATTGACCACCCCGCGCCACTTCTGCTCTCTGTGCCGATGCATTGGCGTCGACAATGGCAGCGAGGCTTCA
ACCAAAGCGATGTATTGGCCGCGCAACTGGCCCGTAGATTAAATCGCCCATTCCTTGCTCACGCTTTTACTCGTTTGTTG
CACACTCCGCCACAGCAAGGGCTCAATAAACAGCAGCGTCAGCGCAATTTAGCTGGTGCTTTTCGCCTCAATCGCTCAGC
GCTGCCCCATGCGATTCCCAAGCATGTCGCGATTGTCGATGATGTGGTCACGACGGGCTGTACGGTACGACAATTATGTC
AATTACTGCTTGCAGTCGGCGTGGAAAGCATTGATATTTATTGCCTCTGCCGAACTCCCGAGAAGGATTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.41

99.153

0.559
  comF Vibrio campbellii strain DS40M4

46.25

100

0.47

Multiple sequence alignment