Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   SDD27957_07140 Genome accession   CM001076
Coordinates   1394248..1394430 (-) Length   60 a.a.
NCBI ID   EFY03053.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1389248..1399430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDD27957_07120 - 1389407..1389580 (-) 174 EFY03049.1 hypothetical protein -
  SDD27957_07125 - 1389651..1391513 (-) 1863 EFY03050.1 putative heavy metal/cadmium-transporting ATPase -
  SDD27957_07130 - 1391729..1392601 (+) 873 EFY03051.1 DNA-binding protein -
  SDD27957_07135 - 1392673..1393863 (+) 1191 EFY03052.1 transporter protein -
  SDD27957_07140 prx 1394248..1394430 (-) 183 EFY03053.1 hypothetical phage protein Regulator
  SDD27957_07145 - 1394599..1395162 (+) 564 EFY03054.1 hypothetical protein -
  SDD27957_07150 - 1395372..1395980 (+) 609 EFY03055.1 putative transposase, IS861 -
  SDD27957_07155 - 1396116..1396709 (-) 594 EFY03056.1 hypothetical phage protein -
  SDD27957_07160 - 1396709..1396873 (-) 165 EFY03057.1 hypothetical protein -
  SDD27957_07165 - 1397039..1398241 (-) 1203 EFY03058.1 phage-associated cell wall hydrolase -
  SDD27957_07170 - 1398238..1398348 (-) 111 EFY03059.1 putative phage membrane protein -
  SDD27957_07175 - 1398352..1398537 (-) 186 EFY03060.1 hypothetical phage protein -
  SDD27957_07180 - 1398534..1398833 (-) 300 EFY03061.1 putative phage membrane protein -

Sequence

Protein


Download         Length: 60 a.a.        Molecular weight: 6966.85 Da        Isoelectric Point: 3.9421

>NTDB_id=20044 SDD27957_07140 EFY03053.1 1394248..1394430(-) (prx) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
MLTYDEFKQVIDDGYITGDTVMIVRKNGQIFDYVLPNEEVRNGEVVTEEKVEEVLVELSR

Nucleotide


Download         Length: 183 bp        

>NTDB_id=20044 SDD27957_07140 EFY03053.1 1394248..1394430(-) (prx) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
ATGCTAACATACGATGAGTTTAAACAGGTAATTGATGACGGATATATCACAGGAGACACAGTTATGATCGTGCGCAAAAA
CGGACAGATTTTTGATTATGTGTTGCCGAATGAAGAGGTAAGAAATGGGGAGGTTGTGACAGAGGAGAAAGTGGAAGAAG
TGCTGGTGGAGCTTTCGAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

86.667

100

0.867
  prx Streptococcus pyogenes MGAS315

86.667

100

0.867
  prx Streptococcus pyogenes MGAS8232

85

100

0.85
  prx Streptococcus pyogenes MGAS315

73.333

100

0.733
  prx Streptococcus pyogenes MGAS315

90.698

71.667

0.65
  prx Streptococcus pyogenes MGAS315

85.366

68.333

0.583
  prx Streptococcus pyogenes MGAS315

73.81

70

0.517

Multiple sequence alignment