Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   CFI09_RS01345 Genome accession   NZ_CP022279
Coordinates   273210..273974 (-) Length   254 a.a.
NCBI ID   WP_001136243.1    Uniprot ID   -
Organism   Escherichia coli strain STEC299     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 268210..278974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFI09_RS01330 (CFI09_01325) yhhJ 270867..271991 (+) 1125 WP_001296492.1 ABC transporter permease -
  CFI09_RS01335 (CFI09_01330) nikR 272000..272401 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  CFI09_RS01340 (CFI09_01335) nikE 272407..273213 (-) 807 WP_000173679.1 nickel import ATP-binding protein NikE -
  CFI09_RS01345 (CFI09_01340) amiE 273210..273974 (-) 765 WP_001136243.1 nickel import ATP-binding protein NikD Regulator
  CFI09_RS01350 (CFI09_01345) nikC 273974..274807 (-) 834 WP_001008957.1 nickel ABC transporter permease subunit NikC -
  CFI09_RS01355 (CFI09_01350) nikB 274804..275748 (-) 945 WP_000947070.1 nickel ABC transporter permease subunit NikB -
  CFI09_RS01360 (CFI09_01355) nikA 275748..277322 (-) 1575 WP_000493122.1 nickel ABC transporter substrate-binding protein -
  CFI09_RS01365 (CFI09_01360) acpT 277433..278020 (-) 588 WP_000285789.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26840.46 Da        Isoelectric Point: 6.6882

>NTDB_id=199876 CFI09_RS01345 WP_001136243.1 273210..273974(-) (amiE) [Escherichia coli strain STEC299]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAVRVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNAPKHAVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=199876 CFI09_RS01345 WP_001136243.1 273210..273974(-) (amiE) [Escherichia coli strain STEC299]
ATGCCACAACAGATTGAACTCCGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTGCA
ACGTGGGCGTGTGCTGGCGTTAGTCGGCGGTAGTGGCAGCGGGAAGTCGCTGACCTGCGCCGCGACGCTGGGCATTCTGC
CTGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTGGCCGATGGAAAACCGGTTTCTCCCTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCGCTGCACACCATGCACACTCACGCGCGTGAAACCTGCCT
GGCGCTGGGGAAACCCGCCGACGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGTGCGCGTGC
TGAAGCTCTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCAGTGCTGTGCGAATCACCG
TTTATCATCGCCGATGAACCAACCACCGACCTCGACGTAGTAGCACAAGCACGCATCCTCGATCTACTGGAAAGCATTAT
GCAAAAACAAGCACCGGGAATGCTGCTGGTTACCCATGATATGGGCGTGGTAGCGCGTCTGGCAGACGATGTGGCGGTAA
TGTCTCACGGTAAGATTGTTGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATGCGGTAACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398

Multiple sequence alignment