Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   S101392_RS08110 Genome accession   NZ_CP021921
Coordinates   1544933..1545382 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis subsp. subtilis strain SRCM101392     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1539933..1550382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101392_RS08070 (S101392_01600) ctaE 1539951..1540574 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  S101392_RS08075 (S101392_01601) ctaF 1540577..1540909 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  S101392_RS08080 (S101392_01602) ctaG 1540936..1541829 (+) 894 WP_088325812.1 cytochrome c oxidase assembly factor CtaG -
  S101392_RS08085 (S101392_01603) ylbA 1541861..1542223 (-) 363 WP_003232238.1 YugN family protein -
  S101392_RS08090 (S101392_01604) ylbB 1542363..1542809 (+) 447 WP_003221362.1 CBS domain-containing protein -
  S101392_RS08095 (S101392_01605) ylbC 1542893..1543933 (+) 1041 WP_032725641.1 CAP domain-containing protein -
  S101392_RS08100 (S101392_01606) ylbD 1544164..1544562 (+) 399 WP_088325814.1 YlbD family protein -
  S101392_RS08105 (S101392_01607) ylbE 1544578..1544817 (+) 240 WP_003232231.1 YlbE-like family protein -
  S101392_RS08110 (S101392_01608) ylbF 1544933..1545382 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  S101392_RS08115 (S101392_01609) ylbG 1545437..1545709 (+) 273 WP_024573211.1 YlbG family protein -
  S101392_RS08120 (S101392_01610) rsmD 1546032..1546586 (+) 555 WP_088325816.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  S101392_RS08125 (S101392_01611) coaD 1546591..1547076 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  S101392_RS08130 (S101392_01612) spoVV 1547087..1548313 (-) 1227 WP_064671350.1 dipicolinic acid transporter SpoVV -
  S101392_RS08135 (S101392_01613) ylbK 1548494..1549276 (+) 783 WP_088325817.1 patatin family protein -
  S101392_RS08140 (S101392_01614) sepM 1549278..1550303 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=198447 S101392_RS08110 WP_003221370.1 1544933..1545382(+) (ylbF) [Bacillus subtilis subsp. subtilis strain SRCM101392]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=198447 S101392_RS08110 WP_003221370.1 1544933..1545382(+) (ylbF) [Bacillus subtilis subsp. subtilis strain SRCM101392]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1