Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   S100333_RS08320 Genome accession   NZ_CP021892
Coordinates   1585149..1585598 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis subsp. subtilis strain SRCM100333     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1580149..1590598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S100333_RS08280 (S100333_01700) ctaE 1580165..1580788 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  S100333_RS08285 (S100333_01701) ctaF 1580791..1581123 (+) 333 WP_014479710.1 cytochrome c oxidase subunit IVB -
  S100333_RS08290 (S100333_01702) ctaG 1581151..1582044 (+) 894 WP_014479711.1 cytochrome c oxidase assembly factor CtaG -
  S100333_RS08295 (S100333_01703) ylbA 1582076..1582438 (-) 363 WP_014479712.1 YugN family protein -
  S100333_RS08300 (S100333_01704) ylbB 1582578..1583024 (+) 447 WP_003221362.1 CBS domain-containing protein -
  S100333_RS08305 (S100333_01705) ylbC 1583108..1584148 (+) 1041 WP_014479713.1 CAP domain-containing protein -
  S100333_RS08310 (S100333_01706) ylbD 1584380..1584778 (+) 399 WP_003232233.1 YlbD family protein -
  S100333_RS08315 (S100333_01707) ylbE 1584794..1585033 (+) 240 WP_003232231.1 YlbE-like family protein -
  S100333_RS08320 (S100333_01708) ylbF 1585149..1585598 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  S100333_RS08325 (S100333_01709) ylbG 1585653..1585925 (+) 273 WP_009967171.1 YlbG family protein -
  S100333_RS08330 (S100333_01710) rsmD 1586248..1586802 (+) 555 WP_033881642.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  S100333_RS08335 (S100333_01711) coaD 1586807..1587292 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  S100333_RS08340 (S100333_01712) spoVV 1587303..1588529 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  S100333_RS08345 (S100333_01713) ylbK 1588710..1589492 (+) 783 WP_003232221.1 patatin family protein -
  S100333_RS08350 (S100333_01714) sepM 1589494..1590519 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=197971 S100333_RS08320 WP_003221370.1 1585149..1585598(+) (ylbF) [Bacillus subtilis subsp. subtilis strain SRCM100333]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=197971 S100333_RS08320 WP_003221370.1 1585149..1585598(+) (ylbF) [Bacillus subtilis subsp. subtilis strain SRCM100333]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment